Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01432 ATGGCTTATCAAAACCACCAACTCTCTCAAGACCATTTCACTCAAGACGACTCCACCACCAAACCAACGTCCGAGCCTCACCAATCCTTCCAACCCGCACCCAACTGGCTCAACACCGCTCTCCTCCGTAACAACCCACCAACCACCAACAACACCAGTACCAATTTCCTCAACCTCCACTCCGCCGCCGCCTCTCAATCCTCCTCCCAATGGCCGATGATTGACGACTCTACCATCGCCGCCATGAAAGCACCGGAGAGCGCCGATGCAGAGGCGGAGGGATTAATGAACTGGCAGAAAGCGAAATATAAAGGAGAAATAATGGCGCATCCCTTGTACGAACAGCTTCTATCAGCACACGTGGCGTGTCTGAGAATCGCCACGCCGGTTGACCAGTTGCCGAGAATCGATGCTCAGCTGGCTGAGTCGCAGAATGTTGTTGCCAAGTACTCTGCCTTTGTTCAAGGCATGCTTGATGATGATAATAAACAACTCGATCATTTCATGTCGCACTATGTTTTGTTGCTTTGTTCATTCAAAGAACAGCTACAGCAACATGTTCGGGTCCATGCTATGGAAGCAGTAATGGCTTGTTGGGAGATCGAGCAATCCTTACAAAGTTTAACAGGAGTTTCACCCGGGGAAGGTACAGGAGCAACAATGTCTGAAGATGAAGATGAACAAGTGGACAGTGATACTAATCTGTTCGATGGAAATTTGGATGGTTCAGATAATAGTATGGGAGGATTTGGTCCTCTTGTTCTAACAGAGAATGAGAGGTCCTTAATGGAACGTGTAAGACATGAATTAAAGCATGAGTTGAAACAGGATTATAAAGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGAAAGAGACGAGCGGGGAAACTTCCCGGTGACACGACCTCAGTCCTTAAAGATTGGTGGCAATCACATGCAAAATGGCCTTATCCTACAGAAGAGGATAAGGCAAGGTTGGTACAAGAAACAGGTTTACAACTGAAACAGATCAATAATTGGTTTATCAATCAAAGGAAGAGAAACTGGCACAGCAATCCTTCAACTTCTAATGTCATGAAGAGCAAACGCAAGAGTAATGCATGCAGGTGA 1113 0.46 MAYQNHQLSQDHFTQDDSTTKPTSEPHQSFQPAPNWLNTALLRNNPPTTNNTSTNFLNLHSAAASQSSSQWPMIDDSTIAAMKAPESADAEAEGLMNWQKAKYKGEIMAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAESQNVVAKYSAFVQGMLDDDNKQLDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSEDEDEQVDSDTNLFDGNLDGSDNSMGGFGPLVLTENERSLMERVRHELKHELKQDYKEKIVDIREEILRKRRAGKLPGDTTSVLKDWWQSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSNVMKSKRKSNACR 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01432 370 Pfam ELK domain 269 290 IPR005539 GO:0003677
Vivi3g01432 370 SUPERFAMILY Homeodomain-like 291 356 IPR009057 -
Vivi3g01432 370 SMART KNOX2_2 154 210 IPR005541 GO:0003677|GO:0005634
Vivi3g01432 370 SMART HOX_1 291 356 IPR001356 GO:0003677
Vivi3g01432 370 MobiDBLite consensus disorder prediction 349 364 - -
Vivi3g01432 370 FunFam homeobox protein knotted-1-like 3 isoform X1 290 351 - -
Vivi3g01432 370 Coils Coil 275 295 - -
Vivi3g01432 370 MobiDBLite consensus disorder prediction 209 230 - -
Vivi3g01432 370 Gene3D - 290 351 - -
Vivi3g01432 370 Pfam Homeobox KN domain 309 348 IPR008422 GO:0003677|GO:0006355
Vivi3g01432 370 ProSiteProfiles 'Homeobox' domain profile. 289 352 IPR001356 GO:0003677
Vivi3g01432 370 ProSiteProfiles ELK domain profile. 269 289 IPR005539 GO:0003677
Vivi3g01432 370 CDD homeodomain 292 353 IPR001356 GO:0003677
Vivi3g01432 370 MobiDBLite consensus disorder prediction 349 370 - -
Vivi3g01432 370 MobiDBLite consensus disorder prediction 1 33 - -
Vivi3g01432 370 SMART ELK_2 269 290 IPR005539 GO:0003677
Vivi3g01432 370 Pfam KNOX1 domain 103 144 IPR005540 GO:0003677|GO:0005634
Vivi3g01432 370 SMART KNOX1_2 101 145 IPR005540 GO:0003677|GO:0005634
Vivi3g01432 370 Pfam KNOX2 domain 161 209 IPR005541 GO:0003677|GO:0005634
Vivi3g01432 370 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 78 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01432 Vivi-Chr3 23157160 23160210 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01432 1 365 Homeobox Transcription Factor Family AT5G25220 62.937 1.36e-174 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vivi3g01432 KNOX2 6.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01432 - - pcin:129303573 514.998