Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01430 ATGGCTTATCAAAACCACCAACTCTCTCAAGACCATTTCACTCAAGACGACTCCACCACCAAACCAACGTCCGAGCCTCACCAATCCTTCCAACCCGCACCCAACTGGCTCAACACCGCTCTCCTCCGTAACAACCCACCAACCACCAACAACACCAGTACCAATTTCCTCAACCTCCACTCCGCCGCCGCCTCTCAATCCTCCTCCCAATGGCCGATGATTGACGACTCTACCATCGCCGCCATGAAAGCACCGGAGAGCGCCGATGCAGAGGCGGAGGGATTAATGAACTGGCAGAAAGCGAAATATAAAGGAGAAATAATGGCGCATCCCTTGTACGAACAGCTTCTATCAGCACACGTGGCGTGTCTGAGAATCGCCACGCCGGTTGACCAGTTGCCGAGAATCGATGCTCAGCTGGCTGAGTCGCAGAATGTTGTTGCCAAGTACTCTGCCTTTGTTCAAGGCATGCTTGATGATGATAATAAACAACTCGATCATTTCATGTCGCACTATGTTTTGTTGCTTTGTTCATTCAAAGAACAGCTACAGCAACATGTTCGGGTCCATGCTATGGAAGCAGTAATGGCTTGTTGGGAGATCGAGCAATCCTTACAAAGTTTAACAGTTTTTACCACATGGTTCACAGGAGTTTCACCCGGGGAAGGTACAGGAGCAACAATGTCTGAAGATGAAGATGAACAAGTGGACAGTGATACTAATCTGTTCGATGGAAATTTGGATGGTTCAGATAATAGTATGGGAGGATTTGGTCCTCTTGTTCTAACAGAGAATGAGAGGTCCTTAATGGAACGTGTAAGACATGAATTAAAGCATGAGTTGAAACAGGATTATAAAGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGAAAGAGACGAGCGGGGAAACTTCCCGGTGACACGACCTCAGTCCTTAAAGATTGGTGGCAATCACATGCAAAATGGCCTTATCCTACAGAAGAGGATAAGGCAAGGTTGGTACAAGAAACAGGTTTACAACTGAAACAGATCAATAATTGGTTTATCAATCAAAGGAAGAGAAACTGGCACAGCAATCCTTCAACTTCTAATGTCATGAAGAGCAAACGCAAGAGTAATGCATGCAGGTGA 1134 0.4586 MAYQNHQLSQDHFTQDDSTTKPTSEPHQSFQPAPNWLNTALLRNNPPTTNNTSTNFLNLHSAAASQSSSQWPMIDDSTIAAMKAPESADAEAEGLMNWQKAKYKGEIMAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAESQNVVAKYSAFVQGMLDDDNKQLDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTVFTTWFTGVSPGEGTGATMSEDEDEQVDSDTNLFDGNLDGSDNSMGGFGPLVLTENERSLMERVRHELKHELKQDYKEKIVDIREEILRKRRAGKLPGDTTSVLKDWWQSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSNVMKSKRKSNACR 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01430 377 Coils Coil 282 302 - -
Vivi3g01430 377 Pfam KNOX2 domain 161 209 IPR005541 GO:0003677|GO:0005634
Vivi3g01430 377 ProSiteProfiles 'Homeobox' domain profile. 296 359 IPR001356 GO:0003677
Vivi3g01430 377 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 63 361 - -
Vivi3g01430 377 SUPERFAMILY Homeodomain-like 298 363 IPR009057 -
Vivi3g01430 377 Pfam ELK domain 276 297 IPR005539 GO:0003677
Vivi3g01430 377 CDD homeodomain 299 360 IPR001356 GO:0003677
Vivi3g01430 377 Gene3D - 297 358 - -
Vivi3g01430 377 ProSiteProfiles ELK domain profile. 276 296 IPR005539 GO:0003677
Vivi3g01430 377 MobiDBLite consensus disorder prediction 356 377 - -
Vivi3g01430 377 FunFam homeobox protein knotted-1-like 3 isoform X1 297 358 - -
Vivi3g01430 377 MobiDBLite consensus disorder prediction 1 33 - -
Vivi3g01430 377 Pfam Homeobox KN domain 316 355 IPR008422 GO:0003677|GO:0006355
Vivi3g01430 377 Pfam KNOX1 domain 103 144 IPR005540 GO:0003677|GO:0005634
Vivi3g01430 377 SMART HOX_1 298 363 IPR001356 GO:0003677
Vivi3g01430 377 SMART KNOX1_2 101 145 IPR005540 GO:0003677|GO:0005634
Vivi3g01430 377 SMART KNOX2_2 154 210 IPR005541 GO:0003677|GO:0005634
Vivi3g01430 377 MobiDBLite consensus disorder prediction 356 371 - -
Vivi3g01430 377 SMART ELK_2 276 297 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01430 Vivi-Chr3 23157160 23160211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01430 86 375 Homeobox Transcription Factor Family AT5G11060 81.164 1.41e-171 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vivi3g01430 KNOX2 6.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01430 - - pcin:129303573 508.064