Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01417 ATGGAGTATCAATTCAATGACCCTTATGAAACTTCCATTGATCCGAGTTTCTTCGATATAACTAACCCCACACTAGCAGATTTATCCATTACTGACAACAATGCACCCCACCAAAATCATCATGGAGTATTTCAACAGTCACATGATACTAACTTTAATCATCATTTTTCCAACCATAATGGTATACTTCAACAGGAACATGGTACTAATGATTTCGAAATGTCACAGAATGATTCATTTGATTACAATGCAATGTCATCTCATCCAATGCATGAGGATCAACAAACTCAACCTTTGAATCAGATTCCGGTTTCGATGAACCAAACCGATGCAATGACACTTGATCAATGGCCACCCACACCAATTCCATATTTTTGCAGTTGTTGTCAAGTTCTCAGAGAAATCATCCATGCAAATGGTAGTCAATTCGAAAAGCTTGAGATTCATGGAAGGTTGGGTTTGATTACCCATGCAATTCATCATCAGACACCTGTTAATGGAGACCTACCAATTAGTCAAATGATTGATTTAAGCAGAAAAAGCCTTGATGAAATAAAGAATTATCTGGCGCAATACTGCATGGAGCATATTTTAGAAGGATACTTTATTCTTCAAGATCCCATGTCTGCATATTATGAAACTCTTTGCACTGGATTGGATTGGATTGAAGATTTTAACATGGAGGGTCCTGTTGATAATAATCAAAATAATTCAGATGAAATGGTGGAGCAAGAGCAAGAACAACAGCAAGTGAGTGAGAATGGAAATCCTATTACTGATAAAAAGAACCTCTCAGAACAGAGGGAAAAAGCGGGAAAATTGACATTGAATGATTTATGCGATTATTTTCATCTACCTATTGAGGAAGCAGCGAAAACTGTGGATTTGTGTCCAACAGTTCTCAAGAAAACATGTCGTAAAGCAGGATTAGCAAGATGGCCTCACCGAAAGGTGAAAAGCCTTTTGAAGCAGATAGCATTACTAGGAACTCAATTGGAAAAACAAGAACCGGCGACAAGGGCAAGGACTGAAGAGGATATTAGCAGGCTTAAGCAAGAAATGATTGATCATTGTGGTGGACATATACCAACAGCCATGTATAACATCGCCGCCTTCTTGCCACCAAAATATCAGAAGCGCCAGTAG 1146 0.3839 MEYQFNDPYETSIDPSFFDITNPTLADLSITDNNAPHQNHHGVFQQSHDTNFNHHFSNHNGILQQEHGTNDFEMSQNDSFDYNAMSSHPMHEDQQTQPLNQIPVSMNQTDAMTLDQWPPTPIPYFCSCCQVLREIIHANGSQFEKLEIHGRLGLITHAIHHQTPVNGDLPISQMIDLSRKSLDEIKNYLAQYCMEHILEGYFILQDPMSAYYETLCTGLDWIEDFNMEGPVDNNQNNSDEMVEQEQEQQQVSENGNPITDKKNLSEQREKAGKLTLNDLCDYFHLPIEEAAKTVDLCPTVLKKTCRKAGLARWPHRKVKSLLKQIALLGTQLEKQEPATRARTEEDISRLKQEMIDHCGGHIPTAMYNIAAFLPPKYQKRQ 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01417 381 PANTHER PROTEIN RKD4 82 381 IPR044607 GO:0003700
Vivi3g01417 381 MobiDBLite consensus disorder prediction 229 261 - -
Vivi3g01417 381 ProSiteProfiles RWP-RK domain profile. 261 341 IPR003035 -
Vivi3g01417 381 MobiDBLite consensus disorder prediction 229 267 - -
Vivi3g01417 381 Coils Coil 234 254 - -
Vivi3g01417 381 Pfam RWP-RK domain 274 321 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01417 Vivi-Chr3 23024321 23026280 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01417 199 341 AtRKD Transcription Factor Family AT4G35590 33.566 1.23e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vivi3g01417 RWP-RK 7.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01417 - - psat:127102209 549.28