Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01360 ATGGCAAAAAAACATTTGTTTTTCTCCTACGTTGTTGTTTTGTCTATCTCAATCCTCTTCATGTCAAAACCATGTTTCTGTGGTATTCAATACATCGGCAAAATCTTACCTGGTACACAAGGTTCACAAATGAATTGGATTGACAGAGAGGGTAAATTTCTCCTCTCAAAAAACCTAAATTTCGCTTTTGGTTTCATGACCACCGTCAACGACTCCACCAAGTTTCTACTAGTAATCATCCATGTATCAAGCTCCACCGTGATTTGGACTGCAAATAGAGCAAAACCTGTTTCTAATTCTGATAACTTCGTCTTTGATCAAAAAGGAAATGCTTTTTTATCAAAAGATGGTGTTTTGATTTGGTCTACAAACACAATTAACAAAGGGGTTTCTTCAATGGTGTTGCAGGATAATGGAAATTTGGTTTTGCTTGGGGGTGATAATAACAGTACGGTGATTTGGCAGAGTTTTGATTTTCCGACTGATACTTTGTTGCCTCAACAGGTTTTCAAAGAGGGGATGAAGCTTACTAGTGAGCCTGGTGCGAATAGTTTGGTTTATGCTCTTGAGATTGAATCTGGGAATGTTGTTCTTTCTGCTGAGTTTAGAGTACCACAGGTTTATTGGACTATGCAGAAGGATAACCGGAAGACGGTTGATAAGGATGGTGATGTCGTGGTTTCGGCGAATCTTAGTGATAATTCTTGGAGATTTTATGATGAGAAGAAGTCTTTGTTGTGGCAGTTCATATTCTCGGCTGATGCGGGTGATAATGCGACATGGATTGCTGTTTTGGGATGGGATGGTGTTATTAGTTTCAAGAATCTCAACAGTGGTGGATCGAATGGTGATTCTTCGACTAGGATACCGCAGGATCCTTGTGGTACACCGGAGCCTTGTGATCCTTACAGTGTATGCACGGCTAATCGCAGTAGCAGGTGTAGCTGTCTTTCTGTCGTTCCTAGTTGTAAACCTGGTTTTGTTTCTCCTTGTGATGATGGTAAACCAGAAAAATCTGTTGAACTTTTGAAAGGTGATGATGGGATTAGTTACTTTGCTCTTGATTATCTGCAGCCATTTTCGAAAACTGATTTGGCTGGGTGTCAAACTTCGTGTCGTGGTAATTGCTCTTGTCTTGCAATGTTCTTTCATAAGAGTTCGGGAAACTGTTTCCTTTTGGAGAGTGTAGGAAGTTTTCAGAAATCTGGTAATGGTGATTCTGGTTATGTTTCTTACATTAAGGTATCGAGTGATGGAGGCGAAAAAGGAAGTGGAGTTAGACCTACACACATCGTTGTCATTGTTGTTATTGTTGTATTAACTTTGTTTGTGATTTCTGTTCTGATCTTTGTTGGGGTAAGATACTACAGGAAAAAGAAAATGTTACCTGAATCTCCAAGGGAGAATTCAGAAGAGGACAATTTCTTGGAGAATTTAACCGGTATGCCAATACGTTACCGATACAAAGATCTTGAAGTTGCAACTAATAACTTCTCAGTGAAGCTTGGTCAAGGAGGTTTTGGCTCAGTTTATAAAGGAGTTCTACCTGATGGAACTCAATTAGCCGTGAAGCAACTGGAAGGTATTGGTCAAGGGAAGAAAGAGTTCAGAGCCGAAGTAAGCATCATTGGAAGCATTCATCATCTTAATTTGGTAAGGCTTAAAGGCTTTTGCGCAGACGGAACTCATAGGCTTTTAGTTTACGAGTATATGGCTAATAACTCGTTGGATAAATGGATATTCAAGAAGAAAAAAGGCGAATTTCTTCTGGATTGGGATACAAGGTATAACATAGCAGTCGGAACAGCGAAAGGGCTAGCTTATCTGCACGAAGATTGTGACTCAAAGATTGTCCATTGTGACATCAAGCCGGAAAACGTACTTCTCGACGATCATTTCATGGCTAAAGTCTCCGATTTCGGTTTAGCCAAGCTCATGAACAGAGAACAAAGCCATGTTTTCACAACGCTAAGAGGAACACGCGGCTACCTTGCACCAGAGTGGATAACAAACTACGCTATATCAGAGAAAAGCGACGTATACAGCTACGGAATGGTGTTGCTAGAGATTATCGGCGGAAGGAAGAACTACGATACTAACGAGACTTCGGAGAAAAACTATTTCCCTAGTTTCGCTTTCAAGATGATGGAGGAAGGTAAAATGCGAGATATACTCGATTCTGAGCTGCAAATTGATGAGCATGATGATAGGGTGCATTGTGCTATCAGGGTTGCATTGTGGTGTATACAAGAAGACATGTCAATGAGACCATCAATGACAAAGGTTGTTCAAATGTTGGAAGGTCTTTGTACTGTTCCTAAACCACCAACTAGTTCTTATTTGGGTTCTAGACTTTATGCAACTGTGTTTAAATCATCTAGTGAAGGAGGAAATTCCTCTGGTCCTTCGGATTGTAATAGTGATGCTTATCTATCAGCAGTTCGTCTTTCTGGCCCCAGATAA 2463 0.404 MAKKHLFFSYVVVLSISILFMSKPCFCGIQYIGKILPGTQGSQMNWIDREGKFLLSKNLNFAFGFMTTVNDSTKFLLVIIHVSSSTVIWTANRAKPVSNSDNFVFDQKGNAFLSKDGVLIWSTNTINKGVSSMVLQDNGNLVLLGGDNNSTVIWQSFDFPTDTLLPQQVFKEGMKLTSEPGANSLVYALEIESGNVVLSAEFRVPQVYWTMQKDNRKTVDKDGDVVVSANLSDNSWRFYDEKKSLLWQFIFSADAGDNATWIAVLGWDGVISFKNLNSGGSNGDSSTRIPQDPCGTPEPCDPYSVCTANRSSRCSCLSVVPSCKPGFVSPCDDGKPEKSVELLKGDDGISYFALDYLQPFSKTDLAGCQTSCRGNCSCLAMFFHKSSGNCFLLESVGSFQKSGNGDSGYVSYIKVSSDGGEKGSGVRPTHIVVIVVIVVLTLFVISVLIFVGVRYYRKKKMLPESPRENSEEDNFLENLTGMPIRYRYKDLEVATNNFSVKLGQGGFGSVYKGVLPDGTQLAVKQLEGIGQGKKEFRAEVSIIGSIHHLNLVRLKGFCADGTHRLLVYEYMANNSLDKWIFKKKKGEFLLDWDTRYNIAVGTAKGLAYLHEDCDSKIVHCDIKPENVLLDDHFMAKVSDFGLAKLMNREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKNYDTNETSEKNYFPSFAFKMMEEGKMRDILDSELQIDEHDDRVHCAIRVALWCIQEDMSMRPSMTKVVQMLEGLCTVPKPPTSSYLGSRLYATVFKSSSEGGNSSGPSDCNSDAYLSAVRLSGPR 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01360 820 FunFam S-receptor-like kinase 5 571 775 - -
Vivi3g01360 820 SUPERFAMILY Protein kinase-like (PK-like) 477 767 IPR011009 -
Vivi3g01360 820 CDD B_lectin 51 160 IPR001480 -
Vivi3g01360 820 ProSitePatterns Protein kinases ATP-binding region signature. 502 524 IPR017441 GO:0005524
Vivi3g01360 820 PIRSF SRK 4 816 IPR024171 GO:0004674
Vivi3g01360 820 Pfam D-mannose binding lectin 86 170 IPR001480 -
Vivi3g01360 820 Pfam Protein kinase domain 500 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g01360 820 SUPERFAMILY WD40 repeat-like 120 290 IPR036322 GO:0005515
Vivi3g01360 820 CDD STKc_IRAK 502 769 - -
Vivi3g01360 820 FunFam serine/threonine-protein kinase PBS1-like 464 570 - -
Vivi3g01360 820 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Vivi3g01360 820 ProSiteProfiles Protein kinase domain profile. 496 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g01360 820 Gene3D Phosphorylase Kinase; domain 1 461 570 - -
Vivi3g01360 820 FunFam Serine/threonine-protein kinase 41 158 - -
Vivi3g01360 820 Gene3D Transferase(Phosphotransferase) domain 1 571 774 - -
Vivi3g01360 820 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 44 777 - -
Vivi3g01360 820 SMART serkin_6 496 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g01360 820 Gene3D - 46 159 IPR036426 -
Vivi3g01360 820 SUPERFAMILY alpha-D-mannose-specific plant lectins 87 177 IPR036426 -
Vivi3g01360 820 SMART blect_4 45 160 IPR001480 -
Vivi3g01360 820 ProSiteProfiles Bulb-type lectin domain profile. 39 156 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01360 Vivi-Chr3 22147111 22150035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01360 438 778 Receptor kinase-like Gene Family AT5G20050 47.383 1.18e-99 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vivi3g01360 Pkinase 1.9e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01360 - - tpra:123882999 1268.45