Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01335 ATGTTGCACTTGCTGCATGGGAAGCTTGATGTCTCTATATATGAGGTCGATTCATTACAAACACTTCGAGGATTCAGTTTCGATATCGGTAACAAGGGAGCATATACAAGCAAGGGGAAGAAAATTCTGTCACAGCTCAAAAATTGCATTATGTGTCAATGCCAATTCCAGCCTGAGAACATTATTGGGATGGGTCTATATGCAACAGTTGATTTAGACAAAGCAAGAGTTGGAAGAACTAGGATGATAAATAACCAACCCTTCAACCCTAAATGGAATGAAAACTTTCACATTTACTCAGCTCATTCAATCTCCAATATTATATTCACTGTCAAACAAGATAACCCTATTGGTGCAACTCTAATAGGAAGAGCTTATGTTCCAGTAGAACAAGTCATAAATGGAAAGACAGTAGACACATGGGCTCAAATACTAGATGTGAATCAAAAGCCAATACAAGGTGGTTCCAAAATCCATGTCCAAATAAAATTCTCACATGTTAAGAATGATCCAAACTGGTCACAAGGACTAAAGAGTCCAACATTTCAAGGGGTTCCTCACACTTTCTTTAAGCAAAATAATGGCTGTCAAATCACTCTTTACCAAGATGCACATGTTCTAGATGGTTCGGTTCCGTTTATTCCGTTAGACGGAGGAGAACGTTACGTCCCGGGAAAATGTTGGGAAGATGTTTATAATGCTATTAATGATGCTAAGCATTTTATTTGCATAACTGGTTGGTCTGTTTACACTGAGATAACATTGATAAGGGATCCAAACAAGTCAACAAGAACAAGCATCACACTTGGAGAGCTTCTCAAGAAGAAAGCTAATGAAGGTGTTAATGTTCTTATGCTTGTTTGGGATGACAGAACTTCTGTTCCAGATTTTAAGAAAGATGGCTTGATGGCAACTCATGATCAAGAAACTAATCAGTATTTCAAAAACACAAATGTGCATTGTGTTTTGTGTCCGCGGAACCCCGGTGTTGGAAGAAGTATAGTTCAAGGTTTCGAAACTTCAACTATGTTCACTCATCATCAGAAGACTATAATTGTTGACAGTAGAGTTGTTGGTTCTGATCAATGGAATGAGAGATCAATCACTAGTTTTGTTGGTGGGATTGATCTTTGTGATGGAAGATATGATACCATGGAACATCCTTTGTTTTCAACTTTGAATACAGTTCATCATGATGATTTTCATCAACCGAATTTCCCTGGTGCTTCGATTAACAAAGGCGGTCCGAGAGAGCCATGGCATGATATTCACTGTAAGCTGGAAGGATCTGTTGCATGGGATGTGTTGAGCAATTTTGAGCAAAGATGGGAGAAGCAAGTTGGAAGGCAATTAGTTCCACTACCTTCAAGCATGCTTGGTGAATACGGTATTACTCGTGGATCGAATGTTGCGACGATGAATGAAAACAAGACATGGAATGTTCAGTTGTTTAGATCGATCGACGATGGTGCTGCTTCCGGCTTCCCTCAAGATCCAAGAGAAGCTTGTGAAAAAGGTCTTGTTAGTGGAAAAGACAGCATCATTGATAGAAGCATTCAAGACGTGTACATAAACGCTATTCGACGAGCGAAAAACTTCATCTACATTGAAAATCAGTATTTTCTAGGCAGTTCATATGGTTGGAAATCATCTGATATAAAAGTTGAAGACATCGGCGCTTTGCATCTCATACCAAAGGAACTCTCATTGAAGATTGTTAGCAAGATTGAAGCAGGAGAAAGATTTTCTGTGTACATTGTAATTCCAATGTGGCCAGAGGGTGTACCTGAAAGTGCTTCAGTTCAAGCTATACTAGATTGGCAAAGAAGGACTATGGAGATGATGTATTCTGACATAGCTGAAGCTCTTCAAAGAAAAGGAATCAGAGCAAATCCAAGAGATTACTTGACTTTCTTTTGCCTCGGAAATCGAGAGGGGAAGAAAATGAATGAATATAGTCCTACAGAAACACCAGAACCAGACAGTGATTATAGTAGAGCACAAAATTCTAGGAGATTCATGATATATGTTCATGCCAAAATGATGATAGTTGATGATGAGTACATAATCATTGGTTCTGCGAACATAAACCAAAGATCAATGGATGGTGCAAGAGACAGTGAGATTGCAATAGGTGCATTTCAACCGGGCCACATAGCATCCAATAATAGGCCACCAAAAGGACAAATCTATGCATTTAGACGTTCACTATGGTATGAGCACCTTGGAGATATAGGTGACACAAGTTTCTTTGATAATCCAGAAAGTTTGAACTGCATCCAACTTGTGAATCGTTGGGCTGAGACCAATTGGGATTTATACTCAAGAGATGCATTTGATGAACACAGAACATTTCATCACCTCATGAGGTATCCAATAGAAGTAGCTAATAATGGAGCCATAACAACTCTTGCTGGATTTGAATATTTTCCTGATACTAAGGCTAGGATTTTAGGTACTAAGTCTGAGTATCTTCCTCCAATTCTCACCACTTAA 2496 0.389 MLHLLHGKLDVSIYEVDSLQTLRGFSFDIGNKGAYTSKGKKILSQLKNCIMCQCQFQPENIIGMGLYATVDLDKARVGRTRMINNQPFNPKWNENFHIYSAHSISNIIFTVKQDNPIGATLIGRAYVPVEQVINGKTVDTWAQILDVNQKPIQGGSKIHVQIKFSHVKNDPNWSQGLKSPTFQGVPHTFFKQNNGCQITLYQDAHVLDGSVPFIPLDGGERYVPGKCWEDVYNAINDAKHFICITGWSVYTEITLIRDPNKSTRTSITLGELLKKKANEGVNVLMLVWDDRTSVPDFKKDGLMATHDQETNQYFKNTNVHCVLCPRNPGVGRSIVQGFETSTMFTHHQKTIIVDSRVVGSDQWNERSITSFVGGIDLCDGRYDTMEHPLFSTLNTVHHDDFHQPNFPGASINKGGPREPWHDIHCKLEGSVAWDVLSNFEQRWEKQVGRQLVPLPSSMLGEYGITRGSNVATMNENKTWNVQLFRSIDDGAASGFPQDPREACEKGLVSGKDSIIDRSIQDVYINAIRRAKNFIYIENQYFLGSSYGWKSSDIKVEDIGALHLIPKELSLKIVSKIEAGERFSVYIVIPMWPEGVPESASVQAILDWQRRTMEMMYSDIAEALQRKGIRANPRDYLTFFCLGNREGKKMNEYSPTETPEPDSDYSRAQNSRRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAIGAFQPGHIASNNRPPKGQIYAFRRSLWYEHLGDIGDTSFFDNPESLNCIQLVNRWAETNWDLYSRDAFDEHRTFHHLMRYPIEVANNGAITTLAGFEYFPDTKARILGTKSEYLPPILTT 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01335 831 Pfam Phospholipase D Active site motif 342 381 IPR001736 GO:0003824
Vivi3g01335 831 Pfam Phospholipase D Active site motif 674 700 IPR001736 GO:0003824
Vivi3g01335 831 Pfam C2 domain 8 143 IPR000008 -
Vivi3g01335 831 PIRSF PLD_plant 1 831 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vivi3g01335 831 CDD C2_plant_PLD 4 164 - -
Vivi3g01335 831 Gene3D Endonuclease Chain A 483 716 - -
Vivi3g01335 831 ProSiteProfiles C2 domain profile. 1 142 IPR000008 -
Vivi3g01335 831 SUPERFAMILY Phospholipase D/nuclease 519 743 - -
Vivi3g01335 831 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 673 700 IPR001736 GO:0003824
Vivi3g01335 831 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 63 166 IPR035892 -
Vivi3g01335 831 FunFam Phospholipase D 486 719 - -
Vivi3g01335 831 SUPERFAMILY Phospholipase D/nuclease 170 454 - -
Vivi3g01335 831 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 342 381 IPR001736 GO:0003824
Vivi3g01335 831 Pfam Phospholipase D C terminal 750 821 IPR024632 -
Vivi3g01335 831 SMART C2_3c 8 141 IPR000008 -
Vivi3g01335 831 PANTHER PHOSPHOLIPASE D 3 819 IPR015679 -
Vivi3g01335 831 FunFam Phospholipase D delta 218 457 - -
Vivi3g01335 831 Gene3D C2 domain 3 168 IPR035892 -
Vivi3g01335 831 SMART pld_4 342 381 IPR001736 GO:0003824
Vivi3g01335 831 SMART pld_4 673 700 IPR001736 GO:0003824
Vivi3g01335 831 Gene3D Endonuclease Chain A 220 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01335 Vivi-Chr3 21774641 21777711 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01335 3 831 Phospholipase D Gene Family (Wang group) AT3G15730 63.353 0.0 1078
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01335 K01115 - gmx:100791688 1303.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01335 3 21774641 21777711 Vivi5g00269 5 3361578 3365517 ECH
Vivi3g01335 3 21774641 21777711 Vivi2g07700 2 224574336 224578341 ECH
Vivi3g01335 3 21774641 21777711 Vivi3g01334 3 21751016 21754490 ECH
Vivi3g01335 3 21774641 21777711 Vivi3g01335 3 21774641 21777711 ECH