Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01334 ATGCCTCAGCTGCTACATGGGATGCTTAGAGTAACCATAGGTGAAGTTGACAGGTTACAATCCGGAATTAGTTTGGCTTTTTGTCACAAGGGCACAACACACAAGGGGAAGAGAATTCTGGCCCAAGTCAAAGGTTGTCTCTTGTGCCGGCCTGAGATTGTTGGAACAAGACTCTATGCAACAGTTGATTTAGATAAGGCAAGGGTTGGGCGAACGAGAATGATAGGGAACCAACCTTCAAATCCCAAATGGAACGAAACCTTTGAAATTTATTGTGCTCATTACATATCAAACCTTGTATTTACTGTCAAAGATGATAATCCAATTGGAGCAACTCTAATTGGAAGAGCTTACATCCCTACCGAAAAAGTTCTCAAAGGACATATAACTGACAGATGGCTTGAGATATTAGACGAAGAAGATCATCGCCCTGTACCAGGTGGTCCTAAAATTCGTGTTAGTATGCATTTCATTAGTGTCACTGAGGACAGCACATGTCTTTGGTCTCAGGGAATACACCTGCCATTTTTGGGAGTTCCGCGAATATTTTTCAACCAGAGACAGGGTTGTAGTGTTACTTTATACCAAGATGCTCATGTTCCTGATAGTATTGATAGTATTTATCCGTGGATTCCGATATCTGGAACAAAATCTTATGTTCCTGGAAGATGCTGGGAAGATATTTACAATGCAATTATGGATGCTAAACACTTTATTTACATAACAGGTTGGTCTGTTCATACTGAAATAACCTTGATTAGGGACCCAAAAAAGTCAACAGAAACTAGAGTCACACTTGGAGAAATGCTCAAGAGAAAAGCCGATGAAGGTGTTAATGTTCTTATTCTTGTTTGGGATGACAGAACCTCTGTTCCAGGTTTTAAGGAGGACGGTTTGATGGGAACACATGATCAAGAAACTGCATATTACTTTAGAAACACAAAGGTACATTGCGTTTTATGTCCGCGTAATCCTGATGGTGGACGAAGCATAGTTCAAGGTTTTCAGATTTCAACAATGTTTACTCATCACCAGAAGACTATAATTGTTGATGGTCAACATGTAGATGGTCATCGTGTTGATGGTCAAGATGTAGATGGTCATCATGTTGATGGTCAACATGTTGAAGGATCAAAGAAGCGAACCGTTATCAGTTTCGTAGGCGGACTCGATCTGTGTGATGGGAGATATGATACCATGGAACACCCTTTGTTTTCAACATTGGATACAGTTCATCATGATGATTTTCATCAGCCTAATTTCCCAGGTGCTTCTATTAAGAAAGGCGGTCCTAGAGAACCGTGGCATGATATTCATTGTAAGCTAGAAGGACCTGTTGCATGGGACGTGTTGTACAATTTTGAGCAAAGATGGGAAAAGCAAGTTGGGAAGAAATTCCTATTACCAATTGAATTTCTTGATAGAATTCTAATCCATCCTTCTGATGCAATGATATCAGAAAAAGATGGAGACACTTGGAGTGTTCAGTTGTTTAGGTCCATTGACGGTGGTGCTGTTTCTCACTTCCCTCAAGCACCAAATGAAGCTATTGAATTAGGACTTGTTAGTGGAAAAGATAACATCATTGATAGAAGCATTCAGGATGCATACATAAACGCTATTCGACGAGCCAAAAACTTCATCTACATTGAAAATCAGTATTTCCTAGGGAGTTCTTATGGTTGGAAATCATCTGATATAAAAGTTGAAGACATCGGCGCTTTGCATCTCATACCAAAGGAACTGTCATTGAAGATTGTTAGTAAGATCGAAGCGGGAGAGAGGTTTGTTGTGTATGTGGTGATACCAATGTGGCCAGAAGGTATACCTGAAAGTGCATCAGTACAGGCGATATTGGACTGGCAAAGAAGGACCATGGAGATGATGTATTCTGATATCGCTGATGCCATAAAAAAGAAGAATATCGAAGCTCACCCTCACCCTCGTGAGTATTTGACATTTTATTGCCTTGGCAAAAGGGAGAGTAAGAAAGATGGAGAGTATACTCCTCCAGAGGAACCAAAGCCTAACACTGACTATCATCGCGCACAGAAGTCGAGAAGGTTCATGATCTATGTTCATTCCAAGATGATGATAGTGGATGATGAATACATACTGATTGGTTCAGCAAACATAAACCAAAGATCAATGGACGGCGGAAGAGACACCGAGATAGCAATGGGAGCATTCCAACCGCATCATCTAGCATCGATTGGGCCACAAAGACCACAAGGTCAAATCTACGGGTTCAGAAGAGCATTATGGTATGAACATATTGGCGGTAACAGTGATGATTTTGATGAACCTGAAAGTTTGGATTGTGTGAGAGTTGTGAACCGTGTTGCTGAGACAAACTGGAAGTTATACTGTGACGATACATTGGATGAAAGTGAAACTACTCATCTTTTGAGGTATCCTGTTGAAGTGGGAGAAGATGGAAGTGTAACATCAATTCCAGGGATGCAGTATTTTCCTGATACTAAGGCTTTGATTGTTGGTTCGAAATCTGAATTGCTTCCTCCAATTCTTACCACTTAG 2538 0.4066 MPQLLHGMLRVTIGEVDRLQSGISLAFCHKGTTHKGKRILAQVKGCLLCRPEIVGTRLYATVDLDKARVGRTRMIGNQPSNPKWNETFEIYCAHYISNLVFTVKDDNPIGATLIGRAYIPTEKVLKGHITDRWLEILDEEDHRPVPGGPKIRVSMHFISVTEDSTCLWSQGIHLPFLGVPRIFFNQRQGCSVTLYQDAHVPDSIDSIYPWIPISGTKSYVPGRCWEDIYNAIMDAKHFIYITGWSVHTEITLIRDPKKSTETRVTLGEMLKRKADEGVNVLILVWDDRTSVPGFKEDGLMGTHDQETAYYFRNTKVHCVLCPRNPDGGRSIVQGFQISTMFTHHQKTIIVDGQHVDGHRVDGQDVDGHHVDGQHVEGSKKRTVISFVGGLDLCDGRYDTMEHPLFSTLDTVHHDDFHQPNFPGASIKKGGPREPWHDIHCKLEGPVAWDVLYNFEQRWEKQVGKKFLLPIEFLDRILIHPSDAMISEKDGDTWSVQLFRSIDGGAVSHFPQAPNEAIELGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSYGWKSSDIKVEDIGALHLIPKELSLKIVSKIEAGERFVVYVVIPMWPEGIPESASVQAILDWQRRTMEMMYSDIADAIKKKNIEAHPHPREYLTFYCLGKRESKKDGEYTPPEEPKPNTDYHRAQKSRRFMIYVHSKMMIVDDEYILIGSANINQRSMDGGRDTEIAMGAFQPHHLASIGPQRPQGQIYGFRRALWYEHIGGNSDDFDEPESLDCVRVVNRVAETNWKLYCDDTLDESETTHLLRYPVEVGEDGSVTSIPGMQYFPDTKALIVGSKSELLPPILTT 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01334 845 Pfam C2 domain 46 135 IPR000008 -
Vivi3g01334 845 PIRSF PLD_plant 1 845 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vivi3g01334 845 SMART pld_4 339 396 IPR001736 GO:0003824
Vivi3g01334 845 SMART pld_4 689 716 IPR001736 GO:0003824
Vivi3g01334 845 SUPERFAMILY Phospholipase D/nuclease 521 774 - -
Vivi3g01334 845 Pfam Phospholipase D Active site motif 339 396 IPR001736 GO:0003824
Vivi3g01334 845 Pfam Phospholipase D Active site motif 690 716 IPR001736 GO:0003824
Vivi3g01334 845 FunFam Phospholipase D 500 735 - -
Vivi3g01334 845 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 689 716 IPR001736 GO:0003824
Vivi3g01334 845 Gene3D Endonuclease Chain A 500 736 - -
Vivi3g01334 845 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 159 IPR035892 -
Vivi3g01334 845 SUPERFAMILY Phospholipase D/nuclease 179 468 - -
Vivi3g01334 845 SMART C2_3c 8 133 IPR000008 -
Vivi3g01334 845 CDD C2_plant_PLD 1 158 - -
Vivi3g01334 845 ProSiteProfiles C2 domain profile. 1 134 IPR000008 -
Vivi3g01334 845 Gene3D Endonuclease Chain A 215 469 - -
Vivi3g01334 845 FunFam Phospholipase D delta 215 474 - -
Vivi3g01334 845 Gene3D C2 domain 6 169 IPR035892 -
Vivi3g01334 845 PANTHER PHOSPHOLIPASE D 4 833 IPR015679 -
Vivi3g01334 845 Pfam Phospholipase D C terminal 764 835 IPR024632 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01334 Vivi-Chr3 21751016 21754490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01334 3 845 Phospholipase D Gene Family (Wang group) AT3G15730 60.915 0.0 1044
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01334 K01115 - gmx:100794115 1231.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01334 3 21751016 21754490 Vivi3g01334 3 21751016 21754490 ECH
Vivi3g01335 3 21774641 21777711 Vivi3g01334 3 21751016 21754490 ECH