Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01333 ATGGTACAACAAACAAAGAAGTTCAGAGGAGTCAGGCAACGCCAGTGGGGCTCTTGGGTGTCAGAGATTCGCCACCCTTTGTTAAAGAGAAGGGTTTGGTTAGGGACATTTGAGACAGCAGAGGCGGCGGCAAGAGCGTATGATCAAGCAGCAATTTTGATGAATGGTCAGAGTGCGAAGACTAATTTCCCGAAGAATCAAGGTGAAGATGCTATTGACACTACTTGTGGCGGTGGCAGCGGTGATGGTGGTGGTGGAAGTAATAATGACTCTTTCTTGTCTCCCAAGGCACTCTCTGAGCTACTCAGCACAAAGCTTAGAAAGTATTGCAAAGACCCTTCTCCATCACTCACTTGTCTGAGGCTGGATACTGATAATTCGCACATTGGAGTGTGGCAAAAGAGAGCTGGATCGCATTCGGAATCTAATTGGGTCATGAGGGTTGAGCTTGGCGGGAAGAAGAAAACCGCAGAGTCAGAGATAGGATCTTCGCAATACATTATGGATGGTGATAATGGTAATGCTGATATCGGAAATAGGGTGGTAGTAGAAGAAGAGGAAAGAGTTGCTTTGCAGATGATTGAAGAGTTACTTAATTGGAACTATCCCTGTGGTTCAACTTCAAGCGATTAA 633 0.4566 MVQQTKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQSAKTNFPKNQGEDAIDTTCGGGSGDGGGGSNNDSFLSPKALSELLSTKLRKYCKDPSPSLTCLRLDTDNSHIGVWQKRAGSHSESNWVMRVELGGKKKTAESEIGSSQYIMDGDNGNADIGNRVVVEEEERVALQMIEELLNWNYPCGSTSSD 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01333 210 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Vivi3g01333 210 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Vivi3g01333 210 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Vivi3g01333 210 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Vivi3g01333 210 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 154 - -
Vivi3g01333 210 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Vivi3g01333 210 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Vivi3g01333 210 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Vivi3g01333 210 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Vivi3g01333 210 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Vivi3g01333 210 MobiDBLite consensus disorder prediction 63 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01333 Vivi-Chr3 21739918 21741273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01333 4 203 AP2-EREBP Transcription Factor Family AT5G25390 57.635 8.31e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi3g01333 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01333 - - lang:109326202 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01333 3 21739918 21741273 Vivi3g01333 3 21739918 21741273 ECH
Vivi1g01597 1 33772138 33773524 Vivi3g01333 3 21739918 21741273 ECH