Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01306 ATGTTGTCCGAGTTGCAAGCCTTGTTCCATTTGCATGTTTCCTGTGACGATGGGACTGGTGGAGAAAGCATTTATGGTTCAAACTTCCCAGACGAGTCACCTAAGCTAAAGCATGACGCTCCAGGGCTTCTAACGATGTCAATTGTTGACCGTGACACACTTGGGTCTCATTTTATCATCACTCTGAAAGCTGATCATCATCTTGATAGGAAGCATGTAGTCTTTGGGAAGCTTGTTGAAGGAATTCAAGTACTGAGGAAAATTGAAGATGTGGGTGATGATGAAGGACATCCAACTGTTACTGTTAAAATTATTTATTGTGGTGAATATAATGAGGATGGGAAGAAAGTAAACAAATCAAAAGCAGGAAAGGATGGGCCTTGGGAAGGCAATAGCCATGAAACACGGAGGAAGGGAAAGCACAAAAGATCTGCAAAAGACAGAAGGAAAAAGAGAAGATACAGCTCATCTGAATCGGAGAGTTCTTCGGATTCAGACACAGAATCTTCGGAAACTGATAGTGATTCTGACTCAGATATATCCTCATCATCTGATACAAGTTCTTCTAGTGATGATAGACGAAAAAAGAGAAAGAGATCTAAGAAAGAAAAATATAAACGTGAAAAAAAGAGAGATAAACGCCGTGACAAAAGGCGAAAAAGACTAGATAAGAGATCGAAGCGTAGATCAAAAAGGGATTCTGGCAGTGATTCAGATAGTGAGAGTGACAGTAGCTCTGATGGTGAAAGTCTTGATACTCAACAGAAAGATCTGAAGCGAAAAGATCGTTCGCAGAAGAAAGCTGAAGTTAAGTCTTCCCCAGTGGTGGAGAAAGATGTGCCTACCATTCATCATGAAAAGGAAGAGGCAGGTAAGCCCGAGAGTAAGCCAAAAATAATAAAGGAAAATGGAGAGCGGCATACCAATGGTACTGGAGCTGCGTATAGATCTGAGAGAAATGAAGAGATGCAGCCTGATGTGATGGATGATCATTTGGGAAAATATAGGAGTCGAAGCATTAGTCCTAAACGACCCACAAGTAAGAGCATGAGTATTAGTCCCGGGAGGAGTAGGAGCAAGAGCCGTAGTATTACCCCAAAAAGAAGAATGAGCAAAAGCCCATCTGTTAGTAGAAGCCCTCCTCGCCAGTCAAGGAGGAGTTTGAGCAGGAGTCCTGTTAGGAGCATCAACAGGAGTCCTGATAGAAGCATTGGTAGGAGTCCAAGCAGAAGCATCATTAACAGGAGCCCAGTGAGGAGCAGAAAGGGGAGAAATGTCAGTAGAAGTCCTGTTATATCCCGTCCTCTTAAAAGTGTCAGCAAGAGCCCTGTTAGATCCCGCCGAAGCAAGAGTTCTCCTAGAGCATCATCAAGAAAAACAATCAGCAGAAGCCCTGTAAGAATGTCAAGAAAGAGCATAAGTCGCAGTCCAATTAGATTTCCTTCAAGAAGCGTCAGCAGAAGCCCTGTAAGAGTGTCAAGAAAAAGTGTAAGTCGTAGTCCAATTAGATCACCTGCTAGAAGCTTAAGCAGAAGCCCTGCAAGAGTGTCAAGAAAGAGTGTAAGTCGTAGTCCAGTTAGATCACGGGTAAGAAGCTTAAGCAGAAGCTCTGGTAGGGTCCCCTCAAAGAGAAGCATCAGCAGAAGTCCTGTAAGAGCACCTAGTAGAAGCAATCGCCGCAGTTATTCTAGGAGTCCTAGCCCTGTACGTAGGAGGACACCTCGTGGGGGTAATTTGTCTAGGAGTGCTTCACCCGATGCTTCGCCAAAGCGTATCAGAAGGGGAAGAGGTTTCAGCGAGCGATACTCCTATGCAAGAAGGTATAGGACCCCTTCTCGGTCTCCGGTGAGGTCAAACCGGTACAATGGTAGAATTGATCGGGACAGATATTCAAGTTACAGAAGGTATTCCCCTAGGCGTTTCAGAAGCCCACCACCGCGTGGAAGAACTCCTCCAAGGTACCGAAAGAGGAGCAGAACACCATCTGTGTCGCCCAATCCACGCAACCGTGCTCGGCGATATAGCAGAAGCCGTAGCCCAATTTACACCCGCTCTCCCGTTAGGAGTACTTCCCCAGATCGATCACGCCCCTCTCGTGTAGAAAGGCGTTCATCATTTTCTCGGAGCAGGAGCAGGAGTTTACCTAAGTCCAGGTCATCTGTAGAATCACCGTCTCCACGAAAAGTAAGTCGAGACAGAAGGTCAAAGTCATCATCCAAAAGCCCAGAGGGAAAGAAAGGCTTGGTCTCATATGGTGATGGTTCTCCCGACTCAGACTAA 2280 0.4553 MLSELQALFHLHVSCDDGTGGESIYGSNFPDESPKLKHDAPGLLTMSIVDRDTLGSHFIITLKADHHLDRKHVVFGKLVEGIQVLRKIEDVGDDEGHPTVTVKIIYCGEYNEDGKKVNKSKAGKDGPWEGNSHETRRKGKHKRSAKDRRKKRRYSSSESESSSDSDTESSETDSDSDSDISSSSDTSSSSDDRRKKRKRSKKEKYKREKKRDKRRDKRRKRLDKRSKRRSKRDSGSDSDSESDSSSDGESLDTQQKDLKRKDRSQKKAEVKSSPVVEKDVPTIHHEKEEAGKPESKPKIIKENGERHTNGTGAAYRSERNEEMQPDVMDDHLGKYRSRSISPKRPTSKSMSISPGRSRSKSRSITPKRRMSKSPSVSRSPPRQSRRSLSRSPVRSINRSPDRSIGRSPSRSIINRSPVRSRKGRNVSRSPVISRPLKSVSKSPVRSRRSKSSPRASSRKTISRSPVRMSRKSISRSPIRFPSRSVSRSPVRVSRKSVSRSPIRSPARSLSRSPARVSRKSVSRSPVRSRVRSLSRSSGRVPSKRSISRSPVRAPSRSNRRSYSRSPSPVRRRTPRGGNLSRSASPDASPKRIRRGRGFSERYSYARRYRTPSRSPVRSNRYNGRIDRDRYSSYRRYSPRRFRSPPPRGRTPPRYRKRSRTPSVSPNPRNRARRYSRSRSPIYTRSPVRSTSPDRSRPSRVERRSSFSRSRSRSLPKSRSSVESPSPRKVSRDRRSKSSSKSPEGKKGLVSYGDGSPDSD 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01306 759 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 1 109 IPR002130 GO:0000413|GO:0003755
Vivi3g01306 759 Gene3D - 11 119 IPR029000 -
Vivi3g01306 759 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 16 109 - -
Vivi3g01306 759 MobiDBLite consensus disorder prediction 725 741 - -
Vivi3g01306 759 MobiDBLite consensus disorder prediction 694 708 - -
Vivi3g01306 759 SUPERFAMILY Cyclophilin-like 14 111 IPR029000 -
Vivi3g01306 759 MobiDBLite consensus disorder prediction 710 724 - -
Vivi3g01306 759 MobiDBLite consensus disorder prediction 115 135 - -
Vivi3g01306 759 Coils Coil 195 215 - -
Vivi3g01306 759 MobiDBLite consensus disorder prediction 319 337 - -
Vivi3g01306 759 MobiDBLite consensus disorder prediction 194 228 - -
Vivi3g01306 759 MobiDBLite consensus disorder prediction 136 150 - -
Vivi3g01306 759 MobiDBLite consensus disorder prediction 620 635 - -
Vivi3g01306 759 MobiDBLite consensus disorder prediction 368 420 - -
Vivi3g01306 759 MobiDBLite consensus disorder prediction 340 360 - -
Vivi3g01306 759 MobiDBLite consensus disorder prediction 250 305 - -
Vivi3g01306 759 MobiDBLite consensus disorder prediction 115 759 - -
Vivi3g01306 759 MobiDBLite consensus disorder prediction 455 568 - -
Vivi3g01306 759 MobiDBLite consensus disorder prediction 678 693 - -
Vivi3g01306 759 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 20 108 IPR002130 GO:0000413|GO:0003755
Vivi3g01306 759 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 57 IPR002130 GO:0000413|GO:0003755
Vivi3g01306 759 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 57 69 IPR002130 GO:0000413|GO:0003755
Vivi3g01306 759 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 70 85 IPR002130 GO:0000413|GO:0003755
Vivi3g01306 759 MobiDBLite consensus disorder prediction 587 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01306 Vivi-Chr3 21416720 21421780 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01306 18 105 U-box Gene Family AT5G67530 42.222 3.96e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01306 K09566 - pop:7462976 229.95