Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01305 ATGAAGGCTATGGCAAAGAAAAAGAATTCCCTGGTGTATATGGACGTGTCTATTGATGGGGATCCAGTTGAAAGGATGGTTTTTGAGCTTTTCTATGACGTTGCTCCGAAGACGGCAGAAAATTTCCGTGCATTATGTACAGGAGAGAGAGGTGTCGGTCCAAATACTGGAAGATCGTTGCACTACAAGGGTTCTTTCTTTCATCGTGTTGTAAAAGGCTCCATTGTGAAGGGTGGTGATTTTGTCAATCGTAATGGGACTGGTGGAGAAAGCATTTATGGTTCAAACTTCCCAGACGAGTCACCTAAGCTAAAGCATGACGCTCCAGGGCTTCTAACGATGTCAATTGTTGACCGTGACACACTTGGGTCTCATTTTATCATCACTCTGAAAGCTGATCATCATCTTGATAGGAAGCATGTAGTCTTTGGGAAGCTTGTTGAAGGAATTCAAGTACTGAGGAAAATTGAAGATGTGGGTGATGATGAAGGACATCCAACTGTTACTGTTAAAATTATTTATTGTGGTGAATATAATGAGGATGGGAAGAAAGTAAACAAATCAAAAGCAGGAAAGGATGGGCCTTGGGAAGGCAATAGCCATGAAACACGGAGGAAGGGAAAGCACAAAAGATCTGCAAAAGACAGAAGGAAAAAGAGAAGATACAGCTCATCTGAATCGGAGAGTTCTTCGGATTCAGACACAGAATCTTCGGAAACTGATAGTGATTCTGACTCAGATATATCCTCATCATCTGATACAAGTTCTTCTAGTGATGATAGACGAAAAAAGAGAAAGAGATCTAAGAAAGAAAAATATAAACGTGAAAAAAAGAGAGATAAACGCCGTGACAAAAGGCGAAAAAGACTAGATAAGAGATCGAAGCGTAGATCAAAAAGGGATTCTGGCAGTGATTCAGATAGTGAGAGTGACAGTAGCTCTGATGGTGAAAGTCTTGATACTCAACAGAAAGATCTGAAGCGAAAAGATCGTTCGCAGAAGAAAGCTGAAGTTAAGTCTTCCCCAGTGGTGGAGAAAGATGTGCCTACCATTCATCATGAAAAGGAAGAGGCAGGTAAGCCCGAGAGTAAGCCAAAAATAATAAAGGAAAATGGAGAGCGGCATACCAATGGTACTGGAGCTGCGTATAGATCTGAGAGAAATGAAGAGATGCAGCCTGATGTGATGGATGATCATTTGGGAAAATATAGGAGTCGAAGCATTAGTCCTAAACGACCCACAAGTAAGAGCATGAGTATTAGTCCCGGGAGGAGTAGGAGCAAGAGCCGTAGTATTACCCCAAAAAGAAGAATGAGCAAAAGCCCATCTGTTAGTAGAAGCCCTCCTCGCCAGTCAAGGAGGAGTTTGAGCAGGAGTCCTGTTAGGAGCATCAACAGGAGTCCTGATAGAAGCATTGGTAGGAGTCCAAGCAGAAGCATCATTAACAGGAGCCCAGTGAGGAGCAGAAAGGGGAGAAATGTCAGTAGAAGTCCTGTTATATCCCGTCCTCTTAAAAGTGTCAGCAAGAGCCCTGTTAGATCCCGCCGAAGCAAGAGTTCTCCTAGAGCATCATCAAGAAAAACAATCAGCAGAAGCCCTGTAAGAATGTCAAGAAAGAGCATAAGTCGCAGTCCAATTAGATTTCCTTCAAGAAGCGTCAGCAGAAGCCCTGTAAGAGTGTCAAGAAAAAGTGTAAGTCGTAGTCCAATTAGATCACCTGCTAGAAGCTTAAGCAGAAGCCCTGCAAGAGTGTCAAGAAAGAGTGTAAGTCGTAGTCCAGTTAGATCACGGGTAAGAAGCTTAAGCAGAAGCTCTGGTAGGGTCCCCTCAAAGAGAAGCATCAGCAGAAGTCCTGTAAGAGCACCTAGTAGAAGCAATCGCCGCAGTTATTCTAGGAGTCCTAGCCCTGTACGTAGGAGGACACCTCGTGGGGGTAATTTGTCTAGGAGTGCTTCACCCGATGCTTCGCCAAAGCGTATCAGAAGGGGAAGAGGTTTCAGCGAGCGATACTCCTATGCAAGAAGGTATAGGACCCCTTCTCGGTCTCCGGTGAGGTCAAACCGGTACAATGGTAGAATTGATCGGGACAGATATTCAAGTTACAGAAGGTATTCCCCTAGGCGTTTCAGAAGCCCACCACCGCGTGGAAGAACTCCTCCAAGGTACCGAAAGAGGAGCAGAACACCATCTGTGTCGCCCAATCCACGCAACCGTGCTCGGCGATATAGCAGAAGCCGTAGCCCAATTTACACCCGCTCTCCCGTTAGGAGTACTTCCCCAGATCGATCACGCCCCTCTCGTGTAGAAAGGCGTTCATCATTTTCTCGGAGCAGGAGCAGGAGTTTACCTAAGTCCAGGTCATCTGTAGAATCACCGTCTCCACGAAAAGTAAGTCGAGACAGAAGGTCAAAGTCATCATCCAAAAGCCCAGAGGGAAAGAAAGGCTTGGTCTCATATGGTGATGGTTCTCCCGACTCAGACTAA 2484 0.4525 MKAMAKKKNSLVYMDVSIDGDPVERMVFELFYDVAPKTAENFRALCTGERGVGPNTGRSLHYKGSFFHRVVKGSIVKGGDFVNRNGTGGESIYGSNFPDESPKLKHDAPGLLTMSIVDRDTLGSHFIITLKADHHLDRKHVVFGKLVEGIQVLRKIEDVGDDEGHPTVTVKIIYCGEYNEDGKKVNKSKAGKDGPWEGNSHETRRKGKHKRSAKDRRKKRRYSSSESESSSDSDTESSETDSDSDSDISSSSDTSSSSDDRRKKRKRSKKEKYKREKKRDKRRDKRRKRLDKRSKRRSKRDSGSDSDSESDSSSDGESLDTQQKDLKRKDRSQKKAEVKSSPVVEKDVPTIHHEKEEAGKPESKPKIIKENGERHTNGTGAAYRSERNEEMQPDVMDDHLGKYRSRSISPKRPTSKSMSISPGRSRSKSRSITPKRRMSKSPSVSRSPPRQSRRSLSRSPVRSINRSPDRSIGRSPSRSIINRSPVRSRKGRNVSRSPVISRPLKSVSKSPVRSRRSKSSPRASSRKTISRSPVRMSRKSISRSPIRFPSRSVSRSPVRVSRKSVSRSPIRSPARSLSRSPARVSRKSVSRSPVRSRVRSLSRSSGRVPSKRSISRSPVRAPSRSNRRSYSRSPSPVRRRTPRGGNLSRSASPDASPKRIRRGRGFSERYSYARRYRTPSRSPVRSNRYNGRIDRDRYSSYRRYSPRRFRSPPPRGRTPPRYRKRSRTPSVSPNPRNRARRYSRSRSPIYTRSPVRSTSPDRSRPSRVERRSSFSRSRSRSLPKSRSSVESPSPRKVSRDRRSKSSSKSPEGKKGLVSYGDGSPDSD 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01305 827 FunFam Peptidyl-prolyl cis-trans isomerase CYP95 4 185 - -
Vivi3g01305 827 MobiDBLite consensus disorder prediction 793 809 - -
Vivi3g01305 827 MobiDBLite consensus disorder prediction 318 373 - -
Vivi3g01305 827 MobiDBLite consensus disorder prediction 182 203 - -
Vivi3g01305 827 Coils Coil 263 283 - -
Vivi3g01305 827 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 12 177 - -
Vivi3g01305 827 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 125 137 IPR002130 GO:0000413|GO:0003755
Vivi3g01305 827 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 30 45 IPR002130 GO:0000413|GO:0003755
Vivi3g01305 827 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 138 153 IPR002130 GO:0000413|GO:0003755
Vivi3g01305 827 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 67 79 IPR002130 GO:0000413|GO:0003755
Vivi3g01305 827 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 110 125 IPR002130 GO:0000413|GO:0003755
Vivi3g01305 827 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 13 177 IPR002130 GO:0000413|GO:0003755
Vivi3g01305 827 MobiDBLite consensus disorder prediction 262 296 - -
Vivi3g01305 827 MobiDBLite consensus disorder prediction 778 792 - -
Vivi3g01305 827 MobiDBLite consensus disorder prediction 762 776 - -
Vivi3g01305 827 MobiDBLite consensus disorder prediction 688 703 - -
Vivi3g01305 827 Gene3D - 1 178 IPR029000 -
Vivi3g01305 827 MobiDBLite consensus disorder prediction 387 405 - -
Vivi3g01305 827 SUPERFAMILY Cyclophilin-like 5 179 IPR029000 -
Vivi3g01305 827 MobiDBLite consensus disorder prediction 204 218 - -
Vivi3g01305 827 MobiDBLite consensus disorder prediction 523 636 - -
Vivi3g01305 827 MobiDBLite consensus disorder prediction 182 827 - -
Vivi3g01305 827 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 14 176 IPR002130 GO:0000413|GO:0003755
Vivi3g01305 827 MobiDBLite consensus disorder prediction 655 675 - -
Vivi3g01305 827 MobiDBLite consensus disorder prediction 436 488 - -
Vivi3g01305 827 MobiDBLite consensus disorder prediction 408 428 - -
Vivi3g01305 827 MobiDBLite consensus disorder prediction 746 761 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01305 Vivi-Chr3 21415199 21421780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01305 29 173 U-box Gene Family AT5G67530 40.136 3.29e-21 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01305 K09566 - gmx:100785820 347.821