Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01292 ATGAAAACGTGGCACAAAAGCATCGACAATGCCTCATTTCGAGAGCGAAAAATCATGAACATTAGAGAAGACGATAATCATTATAACAATATTTTCGACGACAGCCAATACAGCCTCACCGGTTTCCCCCTTCCTCCTCTCGGCGGACTCGGCCCCCGAAAACATAAACTCCGCCGCTTCATCATCTCCCCTAGTAACTCTCATTACAAGAAGTGGCAGTTGTTTTTGGCTGCGTTGGTTTTTTACTCTGCATGGGTTTCACCGTTCGAGTTCGGGTTCTTAAAGGAACCGACGAAGTTTTTTGCTATAGCTGATAATGTTGTGAATGGTTTATTTTTTGTTGATATTGGATTAACCTTCTTTGTTGCTTATCATGACAAGTCTACCTATTTGTTTGAAGATAGATTTCAGTTAATTGCGTTTAGATATATCAGAACATGGTTCTTATTGGATGTATTTTCTTGCATTCCTTATGAGCTTGTTCGCATAATGATACCTGGAGGACTAAAGAGTTATGGCTACTTCAGTATGCTTCGCCTCTGGCGTCTTCGTAGAGTCGGTGCCATGTTTGCAAGATTGGAAAAAGACAGGCATTATAACTACTTCTGGCTGCGGTGTATAAAGCTTACATGTGTTACTTTATTTGTATCGCATTTTGCTGCCTGCTTTTACTTCTTTATTGCGAATAATTATGTTAAAGACCGAAGCACAACGTGGCTCGGGGCTGTTTCTGATGTGGATAGCAAGAGTATGATGACTCTCTACATAACATCATTATACTGGTCCATAATCACACTTTCATCGGTTGGTTATGGTGATGTGCATCCTGTAAATACAAGGGAGATGATATATTGCTTTCTCTATTGCCTGGTTAATGTTGGATTTGGCTCGTACCTCATTGGAAACATGACAAATTTAGTTGTTCACTCCACAAGAAGAACTATGGAATATAGGGACACAGTGCAAGCTGCCACAAAATTTGCCCACCGGAATAGAGTACCTGTCCGTTTGGAAGAACAGATGCTTTCTCATTTGCTTATGAAGTACAAAACTGATTTAGAAGGGGTACAGCAACAAGAGATTATTGATTCCCTTCCAAAAGCTATTCGATCTAGTATCTCATATTGCTTGTTCTATAAATTGATGGACGGAGTATACTTGTTTGAAGGAGTGTCAAAAGACCTCATTTTTCAATTGGTCACGGAGATGAAGGCGGAGTATATTCCTCCAAAGCAAGATGTGGTTATGGATAATGAAGCACCATCAGACTTTTATCTCTTTGTCACCGGTGGTGCAGAACTTATCAAACTCGTCAATGGAGTCGAACAGGTTGTTGGCGAGGTAAATGCAGGAGACTTGGTTGGCGAAGTAGGAGTTCTATGTTACAGGCCACATCCGTATACAGCCCGGACTAAACGATTGAGCCAAGTTTTGCGCTTGAGTCGTACTGCGTTTCTAAATCTTATTCATTCAAGTGTTGGAGATGGGACAGTAATCATGAACAACTTTCTCAATCATTTACAAACTTCCACCATTCCCGGGATGGATGATATTTTGGTAGAAGTAGAGGCCATGTTGGCTCGTGGTAAAACGGATCTGCCTATTGGCGCATACTTTGCAGCAATCAGAAATGACAATAAAATGTTAGAATGGTTGGTGAGGAATGGCTCCGATCTAACTGAAGCAGATAGGCATGGAAGGACAGCAATGCATGTGGCAGCTTTTAATGGCAATGAGCGTGGAGTAACTTTACTTCTAAAGTTTGGTGCTGATCCAAATAGCAAAGATTTGGATGGAAATATCCCTCTATGGGATGCGATGATGGGTGGACATAAATCTGTCGAGAAAATCCTCACAAAATATGGTGCAAACTTATTTTGTGCCCATGCAGGGTACTTAGCATACTCTGCAGCTGAGAAAAATAGCATTGAATTGCTTAAGGAACTCATAAAACTTGGCGTGGATGTGTCAACACCCAACGAGCACGGAGGAAGCACTGCCCTACACGCAGCAGTAAGTGAAGGAAATACCGAAATGGTGAGGCTACTTTTGGACCAAGGAGCTGATGTTGATAAAAAAGATGGAGCTGGCTGGACTCCAAGGGGTTTGGCAGAACATCAAGGCCACGAAGAAATTAAATTGATATTCCAAAATATTAAAGAGAAAATAAAAGAAGTACATGATATTCTAATACCAGAAAGTTTTAACCTTAACGTGCCTTACGGGGGAAGGCTTCGAAGTGAACCTGTAATGCCTGCTGTTCCTAGATCCAAAGAAAGCGGTTTGCTACCACGACCTACTCCTATTCTTGGATCCCAAGAAAGCTTGTTATGTTCACCTACTCATGATGAGTTGCCATGGCTAGATAGTCATCGAAGGCGAAGGGCAAACACCTTTCATAATTCAATTTTCGGGATGATTTCAGCTGCCAATCGTAGTAAGAAAGGTTTTAAGGTATCTGAAAGCATCGTCACGAATACTGAAAACATGCATGGATTAGTAGCTAGAGTGACACTTAGTTGTCCTGAAAAAGGTGAACATGGTGGAAAGCTTTCTTTTCTGCCCAAGTCCCTTCAAGAACTGCTAGACATTGGTGCCAAAAAGTTTAACATCTCACCCACCAAAATTTTGAATAAAGAAGGAGCATTAATTGATGATATAAATCTTATAAGAGATGGTGATCACCTTATTATTGCTAGTGACTGA 2706 0.4106 MKTWHKSIDNASFRERKIMNIREDDNHYNNIFDDSQYSLTGFPLPPLGGLGPRKHKLRRFIISPSNSHYKKWQLFLAALVFYSAWVSPFEFGFLKEPTKFFAIADNVVNGLFFVDIGLTFFVAYHDKSTYLFEDRFQLIAFRYIRTWFLLDVFSCIPYELVRIMIPGGLKSYGYFSMLRLWRLRRVGAMFARLEKDRHYNYFWLRCIKLTCVTLFVSHFAACFYFFIANNYVKDRSTTWLGAVSDVDSKSMMTLYITSLYWSIITLSSVGYGDVHPVNTREMIYCFLYCLVNVGFGSYLIGNMTNLVVHSTRRTMEYRDTVQAATKFAHRNRVPVRLEEQMLSHLLMKYKTDLEGVQQQEIIDSLPKAIRSSISYCLFYKLMDGVYLFEGVSKDLIFQLVTEMKAEYIPPKQDVVMDNEAPSDFYLFVTGGAELIKLVNGVEQVVGEVNAGDLVGEVGVLCYRPHPYTARTKRLSQVLRLSRTAFLNLIHSSVGDGTVIMNNFLNHLQTSTIPGMDDILVEVEAMLARGKTDLPIGAYFAAIRNDNKMLEWLVRNGSDLTEADRHGRTAMHVAAFNGNERGVTLLLKFGADPNSKDLDGNIPLWDAMMGGHKSVEKILTKYGANLFCAHAGYLAYSAAEKNSIELLKELIKLGVDVSTPNEHGGSTALHAAVSEGNTEMVRLLLDQGADVDKKDGAGWTPRGLAEHQGHEEIKLIFQNIKEKIKEVHDILIPESFNLNVPYGGRLRSEPVMPAVPRSKESGLLPRPTPILGSQESLLCSPTHDELPWLDSHRRRRANTFHNSIFGMISAANRSKKGFKVSESIVTNTENMHGLVARVTLSCPEKGEHGGKLSFLPKSLQELLDIGAKKFNISPTKILNKEGALIDDINLIRDGDHLIIASD 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01292 901 SMART cnmp_10 387 504 IPR000595 -
Vivi3g01292 901 PRINTS Ankyrin repeat signature 679 693 IPR002110 GO:0005515
Vivi3g01292 901 PRINTS Ankyrin repeat signature 566 581 IPR002110 GO:0005515
Vivi3g01292 901 ProSiteProfiles Ankyrin repeat region circular profile. 565 596 - -
Vivi3g01292 901 SUPERFAMILY Ankyrin repeat 538 718 IPR036770 -
Vivi3g01292 901 PANTHER POTASSIUM CHANNEL AKT1 35 899 IPR045319 GO:0005249|GO:0006813
Vivi3g01292 901 Gene3D Jelly Rolls 353 512 IPR014710 -
Vivi3g01292 901 ProSiteProfiles Ankyrin repeat profile. 565 597 IPR002110 GO:0005515
Vivi3g01292 901 Pfam Ankyrin repeats (3 copies) 637 712 IPR002110 GO:0005515
Vivi3g01292 901 Pfam Ankyrin repeats (3 copies) 538 596 IPR002110 GO:0005515
Vivi3g01292 901 SUPERFAMILY Voltage-gated potassium channels 64 308 - -
Vivi3g01292 901 PRINTS EAG/ELK/ERG potassium channel family signature 105 115 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi3g01292 901 PRINTS EAG/ELK/ERG potassium channel family signature 299 308 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi3g01292 901 PRINTS EAG/ELK/ERG potassium channel family signature 255 272 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi3g01292 901 Gene3D - 535 717 IPR036770 -
Vivi3g01292 901 SMART ANK_2a 629 658 IPR002110 GO:0005515
Vivi3g01292 901 SMART ANK_2a 565 594 IPR002110 GO:0005515
Vivi3g01292 901 SMART ANK_2a 598 627 IPR002110 GO:0005515
Vivi3g01292 901 SMART ANK_2a 663 692 IPR002110 GO:0005515
Vivi3g01292 901 SMART ANK_2a 532 561 IPR002110 GO:0005515
Vivi3g01292 901 FunFam Potassium channel KAT3 71 309 - -
Vivi3g01292 901 Pfam Cyclic nucleotide-binding domain 408 491 IPR000595 -
Vivi3g01292 901 ProSiteProfiles Ankyrin repeat region circular profile. 663 694 - -
Vivi3g01292 901 ProSiteProfiles Ankyrin repeat profile. 663 695 IPR002110 GO:0005515
Vivi3g01292 901 ProSiteProfiles cAMP/cGMP binding motif profile. 387 506 IPR000595 -
Vivi3g01292 901 FunFam Potassium channel KAT2 376 511 - -
Vivi3g01292 901 SUPERFAMILY cAMP-binding domain-like 312 507 IPR018490 -
Vivi3g01292 901 Pfam Ion transport protein 71 314 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vivi3g01292 901 Gene3D - 69 308 - -
Vivi3g01292 901 Pfam KHA, dimerisation domain of potassium ion channel 836 898 IPR021789 -
Vivi3g01292 901 CDD CAP_ED 387 490 IPR000595 -
Vivi3g01292 901 ProSiteProfiles KHA domain profile. 836 901 IPR021789 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01292 Vivi-Chr3 21322262 21327464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01292 23 901 Ion Channels AT2G25600 50.790 0.0 868
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01292 K21867 - gmx:100786870 1009.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01292 3 21322262 21327464 Vivi3g01292 3 21322262 21327464 ECH
Vivi4g05069 4 181606508 181611828 Vivi3g01292 3 21322262 21327464 PCT