Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01280 ATGGAAGAAAGTGAAGGTGTGAATTGTTGTAGTGGAGGTAGAAGCCCTAGTGAGAGTCGACCTCCGAATCCTAATCCATCTATTGCTTCTGTGTATCGGCAATGCCAACGCAATGATCCTGTCGTTTTGCCATGTAGAAACTCCCTTGTTCGTCACGCTTCTCTTCAAGCGAAAATGAAGTTGTCTGATGTATCTACTGGGGATGTTACTGAAGATTTCCTTCCAAAGCTTCGTTCTGGAGGATACGCAGATGTTGGGTTCCGGTCAAGTATGGAGGATGTGTATGTCTGTGTTGACCACTTTATGCAGGATCCTGGGCTCAACAAACATATAGGTGGACCGAGTGCTTTTTATGGGGTATTTGATGGACATGGCGGAAAGCATGCTGCTGACTTTGCTTGCAATCATTTGCCAAAGTTCATTCTCGAGGATAAAAGTTTCCCAGTAGATATTGAAAGGATAGTTGCTTCGGCCTTTCTGCAAACAGACAATGCATTTGCAGAAGCTTGCTCTCTGGATGCTGCCCTTGCGTCTGGGACCACTGCATTGGCCACTCTTGTTATAGGAAGGTTGCTGTTGGTCGCAAATGCTGGAGATTGTCGAGCAGTGCTGTGCCGCAATGGCAAAGCAATTGAAATGTCAAGAGATCACAAACCAGTTTGCATGAAAGAGCAGAGGCGTATCGAGGCATCTGGGGGGTATGTCTATGATGGATATCTTAATGGACAACTTAGTGTCACTCGAGCTATTGGTGACTGGCACATGGAAGGAATGAAAGGCAAAGATGGTGGACCACTCAGTGCAGAGCCTGAACTCATGACAACTAAACTCACTGCTGAGGACGAATTTCTCATCATAGGCTGTGATGGGATTTGGGATGTTTTTAGAAGTCAAAATGCTGTAGATTTTGCCCGGCGTAGGCTTCAGGACCATAACGACCCAGCCGTGTGTAGTAAGGATCTGGTTGATGAGGCTCTGAAGAGAAAAAGTGGAGACAATTTAGCTGCTGTTGTGGTTTGTTTCCAGCAACAGCCTCCACCAAATTTGGTAGCGCCGCGCGCCAGAGTACACAGGAGCTTCTCTGCTGAAGGTTTGAAGGAGTTGCAAAGCTTTTTGGATAGTTTGGGCAAATGA 1134 0.4647 MEESEGVNCCSGGRSPSESRPPNPNPSIASVYRQCQRNDPVVLPCRNSLVRHASLQAKMKLSDVSTGDVTEDFLPKLRSGGYADVGFRSSMEDVYVCVDHFMQDPGLNKHIGGPSAFYGVFDGHGGKHAADFACNHLPKFILEDKSFPVDIERIVASAFLQTDNAFAEACSLDAALASGTTALATLVIGRLLLVANAGDCRAVLCRNGKAIEMSRDHKPVCMKEQRRIEASGGYVYDGYLNGQLSVTRAIGDWHMEGMKGKDGGPLSAEPELMTTKLTAEDEFLIIGCDGIWDVFRSQNAVDFARRRLQDHNDPAVCSKDLVDEALKRKSGDNLAAVVVCFQQQPPPNLVAPRARVHRSFSAEGLKELQSFLDSLGK 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01280 377 MobiDBLite consensus disorder prediction 10 27 - -
Vivi3g01280 377 ProSitePatterns PPM-type phosphatase domain signature. 117 125 IPR000222 GO:0043169
Vivi3g01280 377 PANTHER PROTEIN PHOSPHATASE 2C 60 339 IPR015655 GO:0004722|GO:0006470
Vivi3g01280 377 ProSiteProfiles PPM-type phosphatase domain profile. 78 341 IPR001932 -
Vivi3g01280 377 MobiDBLite consensus disorder prediction 1 27 - -
Vivi3g01280 377 SMART PP2C_4 68 339 IPR001932 -
Vivi3g01280 377 Gene3D - 62 345 IPR036457 -
Vivi3g01280 377 FunFam Probable protein phosphatase 2C 22 62 344 - -
Vivi3g01280 377 SUPERFAMILY PP2C-like 73 343 IPR036457 -
Vivi3g01280 377 CDD PP2Cc 78 341 IPR001932 -
Vivi3g01280 377 Pfam Protein phosphatase 2C 86 333 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01280 Vivi-Chr3 21243639 21246729 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01280 1 376 PP2C-type Phosphatase Gene Family AT2G25620 65.306 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01280 K14803 - gmx:100804558 584.719