Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01277 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTGGATGTTTACATTCATGATTATCTTGTTAAGAGGGACTTGAAGGCTTCTGCTCAGGCTTTTCAAGCCGAGGGAAAAGTATCCTCGGACCCTGTTGCTATTGATGCTCCTGGTGGTTTTCTGTTTGAGTGGTGGTCGGTTTTCTGGGATATTTTTATTGCCAGGACTAATGAGAAACACTCCGAGGTTGCTGCATCGTATATAGAGACTCAATTAGTTAAGGCAAGGGAACAACAACAGCAGCAACAACCTCAACCGCAGCAGTTGCAACATCAGCAGCAACAACACATGCAGATGCAACAACTTATGTTGCAGAGACATGCTCAACAACAGCAACAGCAGCAGCAACAACATCAGCAGCAACAACAGCCACAATCGCAGCAGCAACAGCAGTCGCAACCACAACAACAACAACAAAGTAGGGACAGGGCTCATCTCTTAAATGGTAGCGCAAATGGGTTAGGTGGAAACCCGGGAACTGCAAATGCAATAGCAACAAAGATGTATGAGGAAAGGTTAAAAGTTCCCCTACAGAGGGATTCTTTGGATGATGCAGCAATGAAGAGATTTGGTGAGAACATGGGTCAACTCTTGGACCCAAGTCATGCCTCGATATTGAAGTCAGCTGCAACTTCTGGTCAGCCTTCAGGGCAAGTTTTGCATGGCGCCGCTGGTGGGATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAATTACCAGGGTCTACAACGGATATGAAGAGTGATATAAATTCTGTTTTAAATCCCAGAGCTGCGGGTCCTGAAGGATCACTGTTAGGAATTTCTGGATCAAATCAAGGAAATAACAATTTGACTTTGAAAGGGTGGCCACTCACAGGTTTGGAGCATCTACGTTCTGGTCTACTCCAGCAACAAAAGCCTTTCATGCAGTCTCCTCAGCCTTTTCATCAACTGCAAATGTTGACTCCACAACATCAGCAACAGCTTATGCTTGCACAACAGAATTTGACATCACCATCCGTAAGTGAAGAAAGTAGGAGGCTGAGAATGCTACTGAATAATAGGAATATTGGCCTAAATAAGGACGGTCTTTCGAACCCTGGGGCTGATGTGTTATCGAATGTTGGATCACCTCTTCATGGTGGCGGCCCTCCATTTCCTCGTGGAGATACAGATATGCTAATGAAGTTGAAACTGGCTCAGCTACAGCAACAACAACAGCAGCATCAACAACAGTCGAGCATCAGTCTACAGCAGCAGCAACTTCAACAGCACACTCTTTCAAATCAGCAGTCTCAGTCTTCAAATCATAGCATGCACCAGCAAGATAAAGTAGGGGGAGGTAGTGGTAGTGTCACCATGGACGGTAGCATGTCAAACTCATATAGAGGAAATGATCAGGTTACGAAAAGCCAGATTGGAAGAAAGAGAAAGCAGACTGTGTCTTCTTCAGGTCCTGCGAATAGTTCAGGAACAGCAAATACAGCGGGTCCTTCACCAAGTTCAGCACCTTCAACACCCTCAACTCATACTCCTGGAGATGCTATGTCAATGCCTGCTTTGCCTCATAATGGCAATTCTTCAAAGCCTCTAATGATGTTTGGCACTGATGGCACTGGGACTCTTACATCACCTTCAAACCAGTTGGCTGATGTTGATCGCTTTGTGGATGATGGATCTCTTGATGAAAATGTAGAGTCTTTTTTATCACAGGATGATACAGACCCTAGAGACCATGTTGGCCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAATTCTGTACGCGCAAGCTCAAGCAAAGTTGCCTGTTGTCATTTCTCATCTGATGGAAAATTACTTGCAAGCGGTGGACATGACAAAAAGGCCGTTATATGGTATACTGATTCTCTAAAACAAAAAGCTACTCTTGAAGAACATTCATCTTTGATAACTGACGTCCGTTTCAGTCCAACCATGCCGCGTCTAGCAACATCCTCTTTTGACAAAACTGTCCGGGTTTGGGATGTTGACAATCCTGGGTATTCTCTTCGCACATTCACAGGACATTCCACATCTGTTATGTCACTAGATTTTCACCCAAATAAAGATGACCTTATCTGCTCTTGTGACGGTGACGGTGAGATACGGTATTGGAGTATAAACAACGGCAGCTGTGTTAGAGTCTCCAAGGGTGGTACTACCCAGATGAGATTTCAACCTCGTTTAGGGAGGTACCTCGCTGCAGCTGCCGAGAACATTGTGTCTATACTTGACGTGGAGACACAGGCCTGCCGATATTCATTAAAGGGTCATACAAAGACAATAGATTCTGTAAGCTGGGATCCATCTGGAGAGTTGCTGGCATCAGTGAGCGAGGACTCAGTTAGGATTTGGACTCTTGGAACAGGAAATGAAGGGGAATGTGTTCATGAGCTTAGCTGTAATGGAAGTAAGTTTCATTCATGTGTTTTTCATCCAACATACCCTTCACTGCTCGTCATTGGCTGTTATCAGTCGATGGAGCTGTGGAACATGGCCGAGAACAAGACAATGACTTTGTCTGCTCATGATGGTTTAATTACTGCCTTGGCGGTTTCAACTGTAAATGGTTTGGTAGCTTCTGCCAGTCACGATAAGTTCATCAAGCTCTGGAAGTAA 2661 0.4476 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLVKAREQQQQQQPQPQQLQHQQQQHMQMQQLMLQRHAQQQQQQQQQHQQQQQPQSQQQQQSQPQQQQQSRDRAHLLNGSANGLGGNPGTANAIATKMYEERLKVPLQRDSLDDAAMKRFGENMGQLLDPSHASILKSAATSGQPSGQVLHGAAGGMSPQVQARSQQLPGSTTDMKSDINSVLNPRAAGPEGSLLGISGSNQGNNNLTLKGWPLTGLEHLRSGLLQQQKPFMQSPQPFHQLQMLTPQHQQQLMLAQQNLTSPSVSEESRRLRMLLNNRNIGLNKDGLSNPGADVLSNVGSPLHGGGPPFPRGDTDMLMKLKLAQLQQQQQQHQQQSSISLQQQQLQQHTLSNQQSQSSNHSMHQQDKVGGGSGSVTMDGSMSNSYRGNDQVTKSQIGRKRKQTVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAMSMPALPHNGNSSKPLMMFGTDGTGTLTSPSNQLADVDRFVDDGSLDENVESFLSQDDTDPRDHVGRCMDVSKGFTFSDVNSVRASSSKVACCHFSSDGKLLASGGHDKKAVIWYTDSLKQKATLEEHSSLITDVRFSPTMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCVRVSKGGTTQMRFQPRLGRYLAAAAENIVSILDVETQACRYSLKGHTKTIDSVSWDPSGELLASVSEDSVRIWTLGTGNEGECVHELSCNGSKFHSCVFHPTYPSLLVIGCYQSMELWNMAENKTMTLSAHDGLITALAVSTVNGLVASASHDKFIKLWK 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01277 886 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 886 - -
Vivi3g01277 886 SMART Lish 8 40 IPR006594 GO:0005515
Vivi3g01277 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 602 643 IPR001680 GO:0005515
Vivi3g01277 886 MobiDBLite consensus disorder prediction 409 535 - -
Vivi3g01277 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 687 729 IPR001680 GO:0005515
Vivi3g01277 886 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 687 725 - -
Vivi3g01277 886 ProSitePatterns Trp-Asp (WD) repeats signature. 663 677 IPR019775 -
Vivi3g01277 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 769 809 IPR001680 GO:0005515
Vivi3g01277 886 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Vivi3g01277 886 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 644 679 - -
Vivi3g01277 886 Gene3D - 735 886 IPR015943 GO:0005515
Vivi3g01277 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 644 679 IPR001680 GO:0005515
Vivi3g01277 886 MobiDBLite consensus disorder prediction 409 517 - -
Vivi3g01277 886 MobiDBLite consensus disorder prediction 89 153 - -
Vivi3g01277 886 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 854 886 - -
Vivi3g01277 886 Pfam WD domain, G-beta repeat 683 720 IPR001680 GO:0005515
Vivi3g01277 886 Pfam WD domain, G-beta repeat 765 799 IPR001680 GO:0005515
Vivi3g01277 886 Pfam WD domain, G-beta repeat 603 633 IPR001680 GO:0005515
Vivi3g01277 886 Pfam WD domain, G-beta repeat 641 676 IPR001680 GO:0005515
Vivi3g01277 886 Pfam WD domain, G-beta repeat 849 886 IPR001680 GO:0005515
Vivi3g01277 886 SMART WD40_4 847 886 IPR001680 GO:0005515
Vivi3g01277 886 SMART WD40_4 680 720 IPR001680 GO:0005515
Vivi3g01277 886 SMART WD40_4 637 676 IPR001680 GO:0005515
Vivi3g01277 886 SMART WD40_4 806 845 IPR001680 GO:0005515
Vivi3g01277 886 SMART WD40_4 762 800 IPR001680 GO:0005515
Vivi3g01277 886 SMART WD40_4 595 634 IPR001680 GO:0005515
Vivi3g01277 886 SUPERFAMILY WD40 repeat-like 600 886 IPR036322 GO:0005515
Vivi3g01277 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 854 886 IPR001680 GO:0005515
Vivi3g01277 886 Gene3D - 578 734 IPR015943 GO:0005515
Vivi3g01277 886 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 769 801 - -
Vivi3g01277 886 FunFam Transcriptional corepressor LEUNIG 730 886 - -
Vivi3g01277 886 CDD WD40 602 886 - -
Vivi3g01277 886 Pfam LisH 10 36 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01277 Vivi-Chr3 21176331 21183888 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01277 681 885 Miscellaneous Gene Families AT5G08390 24.286 1.99e-12 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vivi3g01277 WD40 0.003 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01277 - - gmx:100816263 1244.95