Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01275 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTGGATGTTTACATTCATGATTATCTTGTTAAGAGGGACTTGAAGGCTTCTGCTCAGGCTTTTCAAGCCGAGGGAAAAGTATCCTCGGACCCTGTTGCTATTGATGCTCCTGGTGGTTTTCTGTTTGAGTGGTGGTCGGTTTTCTGGGATATTTTTATTGCCAGGACTAATGAGAAACACTCCGAGGTTGCTGCATCGTATATAGAGACTCAATTAGTTAAGGCAAGGGAACAACAACAGCAGCAACAACCTCAACCGCAGCAGTTGCAACATCAGCAGCAACAACACATGCAGATGCAACAACTTATGTTGCAGAGACATGCTCAACAACAGCAACAGCAGCAGCAACAACATCAGCAGCAACAACAGCCACAATCGCAGCAGCAACAGCAGTCGCAACCACAACAACAACAACAAAGTAGGGACAGGGCTCATCTCTTAAATGGTAGCGCAAATGGGTTAGGTGGAAACCCGGGAACTGCAAATGCAATAGCAACAAAGATGTATGAGGAAAGGTTAAAAGTTCCCCTACAGAGGGATTCTTTGGATGATGCAGCAATGAAGAGATTTGGTGAGAACATGGGTCAACTCTTGGACCCAAGTCATGCCTCGATATTGAAGTCAGCTGCAACTTCTGGTCAGCCTTCAGGGCAAGTTTTGCATGGCGCCGCTGGTGGGATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAATTACCAGGGTCTACAACGGATATGAAGAGTGATATAAATTCTGTTTTAAATCCCAGAGCTGCGGGTCCTGAAGGATCACTGTTAGGAATTTCTGGATCAAATCAAGGAAATAACAATTTGACTTTGAAAGGGTGGCCACTCACAGGTTTGGAGCATCTACGTTCTGGTCTACTCCAGCAACAAAAGCCTTTCATGCAGTCTCCTCAGCCTTTTCATCAACTGCAAATGTTGACTCCACAACATCAGCAACAGCTTATGCTTGCACAACAGAATTTGACATCACCATCCGTAAGTGAAGAAAGTAGGAGGCTGAGAATGCTACTGAATAATAGGAATATTGGCCTAAATAAGGACGGTCTTTCGAACCCTGGGGCTGATGTGTTATCGAATGTTGGATCACCTCTTCATGGTGGCGGCCCTCCATTTCCTCGTGGAGATACAGATATGCTAATGAAGTTGAAACTGGCTCAGCTACAGCAACAACAACAGCAGCATCAACAACAGTCGAGCATCAGTCTACAGCAGCAGCAACTTCAACAGCACACTCTTTCAAATCAGCAGTCTCAGTCTTCAAATCATAGCATGCACCAGCAAGATAAAGTAGGGGGAGGTAGTGGTAGTGTCACCATGGACGGTAGCATGTCAAACTCATATAGAGGAAATGATCAGGTTACGAAAAGCCAGATTGGAAGAAAGAGAAAGCAGACTGTGTCTTCTTCAGGTCCTGCGAATAGTTCAGGAACAGCAAATACAGCGGGTCCTTCACCAAGTTCAGCACCTTCAACACCCTCAACTCATACTCCTGGAGATGCTATGTCAATGCCTGCTTTGCCTCATAATGGCAATTCTTCAAAGCCTCTAATGATGTTTGGCACTGATGGCACTGGGACTCTTACATCACCTTCAAACCAGTTGTGGGATGATAAAGATCTTGAATTGCAGGCTGATGTTGATCGCTTTGTGGATGATGGATCTCTTGATGAAAATGTAGAGTCTTTTTTATCACAGGATGATACAGACCCTAGAGACCATGTTGGCCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAATTCTGTACGCGCAAGCTCAAGCAAAGTTGCCTGTTGTCATTTCTCATCTGATGGAAAATTACTTGCAAGCGGTGGACATGACAAAAAGGCCGTTATATGGTATACTGATTCTCTAAAACAAAAAGCTACTCTTGAAGAACATTCATCTTTGATAACTGACGTCCGTTTCAGTCCAACCATGCCGCGTCTAGCAACATCCTCTTTTGACAAAACTGTCCGGGTTTGGGATGTTGACAATCCTGGGTATTCTCTTCGCACATTCACAGGACATTCCACATCTGTTATGTCACTAGATTTTCACCCAAATAAAGATGACCTTATCTGCTCTTGTGACGGTGACGGTGAGATACGGTATTGGAGTATAAACAACGGCAGCTGTGTTAGAGTCTCCAAGGGTGGTACTACCCAGATGAGATTTCAACCTCGTTTAGGGAGGTACCTCGCTGCAGCTGCCGAGAACATTGTGTCTATACTTGACGTGGAGACACAGGCCTGCCGATATTCATTAAAGGGTCATACAAAGACAATAGATTCTGTAAGCTGGGATCCATCTGGAGAGTTGCTGGCATCAGTGAGCGAGGACTCAGTTAGGATTTGGACTCTTGGAACAGGAAATGAAGGGGAATGTGTTCATGAGCTTAGCTGTAATGGAAGTAAGTTTCATTCATGTGTTTTTCATCCAACATACCCTTCACTGCTCGTCATTGGCTGTTATCAGTCGATGGAGCTGTGGAACATGGCCGAGAACAAGACAATGACTTTGTCTGCTCATGATGGTTTAATTACTGCCTTGGCGGTTTCAACTGTAAATGGTTTGGTAGCTTCTGCCAGTCACGATAAGTTCATCAAGCTCTGGAAGTAA 2688 0.4468 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLVKAREQQQQQQPQPQQLQHQQQQHMQMQQLMLQRHAQQQQQQQQQHQQQQQPQSQQQQQSQPQQQQQSRDRAHLLNGSANGLGGNPGTANAIATKMYEERLKVPLQRDSLDDAAMKRFGENMGQLLDPSHASILKSAATSGQPSGQVLHGAAGGMSPQVQARSQQLPGSTTDMKSDINSVLNPRAAGPEGSLLGISGSNQGNNNLTLKGWPLTGLEHLRSGLLQQQKPFMQSPQPFHQLQMLTPQHQQQLMLAQQNLTSPSVSEESRRLRMLLNNRNIGLNKDGLSNPGADVLSNVGSPLHGGGPPFPRGDTDMLMKLKLAQLQQQQQQHQQQSSISLQQQQLQQHTLSNQQSQSSNHSMHQQDKVGGGSGSVTMDGSMSNSYRGNDQVTKSQIGRKRKQTVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAMSMPALPHNGNSSKPLMMFGTDGTGTLTSPSNQLWDDKDLELQADVDRFVDDGSLDENVESFLSQDDTDPRDHVGRCMDVSKGFTFSDVNSVRASSSKVACCHFSSDGKLLASGGHDKKAVIWYTDSLKQKATLEEHSSLITDVRFSPTMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCVRVSKGGTTQMRFQPRLGRYLAAAAENIVSILDVETQACRYSLKGHTKTIDSVSWDPSGELLASVSEDSVRIWTLGTGNEGECVHELSCNGSKFHSCVFHPTYPSLLVIGCYQSMELWNMAENKTMTLSAHDGLITALAVSTVNGLVASASHDKFIKLWK 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01275 895 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 696 734 - -
Vivi3g01275 895 ProSiteProfiles Trp-Asp (WD) repeats profile. 696 738 IPR001680 GO:0005515
Vivi3g01275 895 SMART Lish 8 40 IPR006594 GO:0005515
Vivi3g01275 895 Gene3D - 742 895 IPR015943 GO:0005515
Vivi3g01275 895 ProSiteProfiles Trp-Asp (WD) repeats profile. 653 688 IPR001680 GO:0005515
Vivi3g01275 895 MobiDBLite consensus disorder prediction 409 535 - -
Vivi3g01275 895 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 895 - -
Vivi3g01275 895 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 653 688 - -
Vivi3g01275 895 SMART WD40_4 856 895 IPR001680 GO:0005515
Vivi3g01275 895 SMART WD40_4 815 854 IPR001680 GO:0005515
Vivi3g01275 895 SMART WD40_4 604 643 IPR001680 GO:0005515
Vivi3g01275 895 SMART WD40_4 771 809 IPR001680 GO:0005515
Vivi3g01275 895 SMART WD40_4 689 729 IPR001680 GO:0005515
Vivi3g01275 895 SMART WD40_4 646 685 IPR001680 GO:0005515
Vivi3g01275 895 Gene3D - 589 741 IPR015943 GO:0005515
Vivi3g01275 895 ProSiteProfiles Trp-Asp (WD) repeats profile. 863 895 IPR001680 GO:0005515
Vivi3g01275 895 SUPERFAMILY WD40 repeat-like 609 895 IPR036322 GO:0005515
Vivi3g01275 895 ProSitePatterns Trp-Asp (WD) repeats signature. 672 686 IPR019775 -
Vivi3g01275 895 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Vivi3g01275 895 MobiDBLite consensus disorder prediction 409 517 - -
Vivi3g01275 895 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 778 810 - -
Vivi3g01275 895 MobiDBLite consensus disorder prediction 89 153 - -
Vivi3g01275 895 ProSiteProfiles Trp-Asp (WD) repeats profile. 778 818 IPR001680 GO:0005515
Vivi3g01275 895 CDD WD40 611 895 - -
Vivi3g01275 895 Pfam LisH 10 36 IPR006594 GO:0005515
Vivi3g01275 895 FunFam Transcriptional corepressor LEUNIG 739 895 - -
Vivi3g01275 895 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 863 895 - -
Vivi3g01275 895 Pfam WD domain, G-beta repeat 612 642 IPR001680 GO:0005515
Vivi3g01275 895 Pfam WD domain, G-beta repeat 692 729 IPR001680 GO:0005515
Vivi3g01275 895 Pfam WD domain, G-beta repeat 774 808 IPR001680 GO:0005515
Vivi3g01275 895 Pfam WD domain, G-beta repeat 650 685 IPR001680 GO:0005515
Vivi3g01275 895 Pfam WD domain, G-beta repeat 858 895 IPR001680 GO:0005515
Vivi3g01275 895 ProSiteProfiles Trp-Asp (WD) repeats profile. 611 652 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01275 Vivi-Chr3 21176331 21183890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01275 690 894 Miscellaneous Gene Families AT5G08390 24.286 2.29e-12 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vivi3g01275 WD40 0.003 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01275 - - gmx:100816263 1272.69