Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01263 ATGGCGCTTCTACTGACAATGGTTCACTCTCACAACAACAACACTTCTGGGACCCAACACCATCTCAAACCGGTCCTCCGTGATTTTCTCGGCATGAAACCATCACCGTCACCCTCCTCCGCCGCTCCTACCCCTTTCTCCTCCACCTCTGATACCGCTTCCGAAAAGCAGGTATCAAATCATCTGGAGGGAGTTCCATACTATGGCCCAACAACTGATTTTTCCGACAGACTAGTGGGGAACAAGAGAACTAGTTCTGATTCCTCTTTTATTGCTTCCTCTAGAGATGCCTTCCAATTGGGCCCTGATTCCTTTCAAAATTCACATTTGATGAAGGTTCTTCGACATGTGTCTGGAGGAGAGAGATCTAGAAGGCCTAATGACGATGAAGTGTTACTTGGTATGCAGTCTATGAAGCCATCTTCTAGTTCGCAGATATTTCATCCTCCCACCAGCACTATGATTGATGGGAATAAATGGGATCGGTCGATTCTCATGAATGCTGGCCCTTCCATGCAGCATATTCCGCGTGGAGGACAGATGGCTCCTTTTGCACACCAGTTAGCTTCGAATAAGATTAGAGATACCAATGCCGGACCTTCGTTTATCTCTCAGTTTGCTGCCGATGAAGGATCGAGAACTGGAATCAAGGGCCCTGGACTTTTAAGTTCCGTAAACACATCTGCTTCTGCTAGTGATAAAGTTTCATCTGCCGTGCTGCTCGGTGGAAGCAGGCCAAAGCCGTTAACTAATGTTATAGAATCATCCACTCCCCCAAGTCAACATGGGCTAACACCTGCCAGCCGCCAGATGACTATCTTTTATGGAGGTCAAGCTCATGTTTTTGATGATGTCCACCCACATAAGGCAGATGTTATAATGGCTTTGGCTGGGTCAAATGGAGGATCTTGGTCCACAGCATTCTCGCCGAAATCTGCTGCAAAGCTGGTTAATGATAGTAATTTGCATAGTGGAGAAAATGAAGCAGGATTAGTGAGTAATGTACCATTCCCGCAAGAGCTTCATGGAAAGTTGCCTGTAACTGGCAGTTCTAGTCGTGCCGTTGGACCTGGTGACCGTGTATCTACTCCAACCGGGGCACACCAAGGAAGCATATTTGCTAAAGACACAAGAAATTCGATTCAAGCAGCAGACCCCAGTTCCGAAGATAAAAGAGCACTGTGA 1185 0.4692 MALLLTMVHSHNNNTSGTQHHLKPVLRDFLGMKPSPSPSSAAPTPFSSTSDTASEKQVSNHLEGVPYYGPTTDFSDRLVGNKRTSSDSSFIASSRDAFQLGPDSFQNSHLMKVLRHVSGGERSRRPNDDEVLLGMQSMKPSSSSQIFHPPTSTMIDGNKWDRSILMNAGPSMQHIPRGGQMAPFAHQLASNKIRDTNAGPSFISQFAADEGSRTGIKGPGLLSSVNTSASASDKVSSAVLLGGSRPKPLTNVIESSTPPSQHGLTPASRQMTIFYGGQAHVFDDVHPHKADVIMALAGSNGGSWSTAFSPKSAAKLVNDSNLHSGENEAGLVSNVPFPQELHGKLPVTGSSSRAVGPGDRVSTPTGAHQGSIFAKDTRNSIQAADPSSEDKRAL 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01263 394 SMART tify_2 264 299 IPR010399 -
Vivi3g01263 394 MobiDBLite consensus disorder prediction 364 386 - -
Vivi3g01263 394 Pfam tify domain 266 298 IPR010399 -
Vivi3g01263 394 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 196 332 IPR040390 -
Vivi3g01263 394 MobiDBLite consensus disorder prediction 345 394 - -
Vivi3g01263 394 ProSiteProfiles Tify domain profile. 264 299 IPR010399 -
Vivi3g01263 394 MobiDBLite consensus disorder prediction 42 58 - -
Vivi3g01263 394 MobiDBLite consensus disorder prediction 28 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01263 Vivi-Chr3 21020557 21023434 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01263 15 297 Tify Gene Family AT4G32570 35.452 1.51e-35 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vivi3g01263 tify 1.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01263 - - gmx:100819293 566.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01263 3 21020557 21023434 Vivi3g01263 3 21020557 21023434 PCT