Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01262 ATGGCGCTTCTACTGACAATGGTTCACTCTCACAACAACAACACTTCTGGGACCCAACACCATCTCAAACCGGTCCTCCGTGATTTTCTCGGCATGAAACCATCACCGTCACCCTCCTCCGCCGCTCCTACCCCTTTCTCCTCCACCTCTGATACCGCTTCCGAAAAGCAGGTATCAAATCATCTGGAGGGAGTTCCATACTATGGCCCAACAACTGATTTTTCCGACAGACTAGTGGGGAACAAGAGAACTAGTTCTGATTCCTCTTTTATTGCTTCCTCTAGAGATGCCTTCCAATTGGGCCCTGATTCCTTTCAAAATTCACATTTGATGAAGGTTCTTCGACATGTGTCTGGAGGAGAGAGATCTAGAAGGCCTAATGACGATGAAGTGTTACTTGGTATGCAGTCTATGAAGCCATCTTCTAGTTCGCAGATATTTCATCCTCCCACCAGCACTATGATTGATGGGAATAAATGGGATCGGTCGATTCTCATGAATGCTGGCCCTTCCATGCAGCATATTCCGCGTGGAGGACAGATGGCTCCTTTTGCACACCAGTTAGCTTCGAATAAGATTAGAGATACCAATGCCGGACCTTCGTTTATCTCTCAGTTTGCTGCCGATGAAGGATCGAGAACTGGAATCAAGGGCCCTGGACTTTTAAGTTCCGTAAACACATCTGCTTCTGCTAGTGATAAAGTTTCATCTGCCGTGCTGCTCGGTGGAAGCAGGCCAAAGCCGTTAACTAATGTTATAGAATCATCCACTCCCCCAAGCAGTCAACATGGGCTAACACCTGCCAGCCGCCAGATGACTATCTTTTATGGAGGTCAAGCTCATGTTTTTGATGATGTCCACCCACATAAGGCAGATGTTATAATGGCTTTGGCTGGGTCAAATGGAGGATCTTGGTCCACAGCATTCTCGCCGAAATCTGCTGCAAAGCTGGTTAATGATAGTAATTTGCATAGTGGAGAAAATGAAGCAGGATTAGTGAGTAATGTACCATTCCCGCAAGAGCTTCATGGAAAGTTGCCTGTAACTGGCAGTTCTAGTCGTGCCGTTGGACCTGGTGACCGTGTATCTACTCCAACCGGGGCACACCAAGGAAGCATATTTGCTAAAGACACAAGAAATTCGATTCAAGCAGCAGACCCCAGTTCCGAAGATAAAAGAGCACTGTGA 1188 0.4697 MALLLTMVHSHNNNTSGTQHHLKPVLRDFLGMKPSPSPSSAAPTPFSSTSDTASEKQVSNHLEGVPYYGPTTDFSDRLVGNKRTSSDSSFIASSRDAFQLGPDSFQNSHLMKVLRHVSGGERSRRPNDDEVLLGMQSMKPSSSSQIFHPPTSTMIDGNKWDRSILMNAGPSMQHIPRGGQMAPFAHQLASNKIRDTNAGPSFISQFAADEGSRTGIKGPGLLSSVNTSASASDKVSSAVLLGGSRPKPLTNVIESSTPPSSQHGLTPASRQMTIFYGGQAHVFDDVHPHKADVIMALAGSNGGSWSTAFSPKSAAKLVNDSNLHSGENEAGLVSNVPFPQELHGKLPVTGSSSRAVGPGDRVSTPTGAHQGSIFAKDTRNSIQAADPSSEDKRAL 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01262 395 MobiDBLite consensus disorder prediction 249 267 - -
Vivi3g01262 395 SMART tify_2 265 300 IPR010399 -
Vivi3g01262 395 MobiDBLite consensus disorder prediction 246 267 - -
Vivi3g01262 395 MobiDBLite consensus disorder prediction 347 395 - -
Vivi3g01262 395 Pfam tify domain 267 299 IPR010399 -
Vivi3g01262 395 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 198 334 IPR040390 -
Vivi3g01262 395 MobiDBLite consensus disorder prediction 42 58 - -
Vivi3g01262 395 MobiDBLite consensus disorder prediction 365 387 - -
Vivi3g01262 395 MobiDBLite consensus disorder prediction 28 58 - -
Vivi3g01262 395 ProSiteProfiles Tify domain profile. 265 300 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01262 Vivi-Chr3 21020557 21023434 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01262 15 298 Tify Gene Family AT4G32570 35.452 8.75e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vivi3g01262 tify 1.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01262 - - gmx:100819293 572.778