Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01261 ATGAGTAGAGTGAGTAGCAGTACATTGCGTGCCAAAGGCGAAGAGTGTCCACCCAGAATTACTAGATCGAGGGCGAGAGTTTTGGAATCTTGTTCTAAGAATGAAGGGAAGAATGTTAAGAGAGCAGTGAGTTCCAAAAGAGGTGTTTCTTCTGAGAATAAGACTTGTGTGGTTGTTCCTGATCTTCCTCCGCGGAAGAGAAGGGCAGGGCTTACAGATGTTACTAACATCGGTGCAAAACCACGTGATAAGCGTGTTAAACAGTCCCAATTTGAGGCCAAAGGAGTTTACCAGAAGAAAAACACAAAGCTAGATTCAGATGTCTCCGTTGAAGTTTCATCAGTACAAGGGGGTGCTAAAGTAATGGTGGAGTCAAACGACACTATTGCTGCAGTAAGTTTGGATGAAGAGCCAACTGGACATTGTATGTCCAACAACATTAGAGAACATGTCATGACAGACACTGCACTGTCGATGCAAGAATCTGTGGACTCTGGCGAACTTCAAACCTCTTCAAGTCCAAACAAAGATATAAGTATGATTTGTGAGAAGCCAGGAGCCTCAGATTGCCTGACTGTTGTGGACATTGATAAAGAGTTAAAGGATTCTCAAGTTTGGAGTGATTATGCCCCTGATATATACTGCAAAGCTCGAGTAACCGAGCTTGAGAAGAGGTCATCTACCAATTACATGGAGAAATTGCAGCAAGACATTTCTCCAACCATGCGCGGAATTCTGATTGATTGGCTTGTGGAGGTTTCGGAGGAATACAAGTTGGTTCCAGATACTCTATACCTTACTGTTAACCTCATTGATCGGTTTCTCTCGACATGTTTGATTCAGAAACACAAGCTCCAATTGCTTGGCGTTACTTGTATGTTCATTGCATCAAAGTACGAAGAGATTTGTGCTCCTCGAGTGGAAGAATTTTGCTTCATCACAGATAATACATACACAAAAGCAGAGGTAGTGAAAATGGAGAAGGAAGTTCTTAACCTTCTGCGTTTTCAATTATCCGTTCCCACAACCAAAACATTTCTCAGGAGATTCATTCAAGCAGCACAATCTTCTTACAAGGATCCTCGTGTTGAACTGGAATTCCTGGCAAATTATTTAGCAGAGCTTACTCTTGTGGAATACAGCTTCTTACAGTTTCTACCATCTCTTGTGGCTGCTTCTGCTGTATTCCTTGCGAGATGGACCCTCAACCACTCAGAACATCCGTGGACTCTAACTCTGGAGCATTATACAAACTGTAAAGCTTCAGAGCTAAAAACCGTTGTTCTTGCAATGAAAGATCTGCAGTTAAATACCAAAGGTTGTCCCCTCAATGCTATTCGCGAGAAATATAAACAAGAGAAGTTCAACTGTGTGGCGAATCTATCTCCCAAACCGGTGCTGTCATTGTTCTAG 1413 0.4239 MSRVSSSTLRAKGEECPPRITRSRARVLESCSKNEGKNVKRAVSSKRGVSSENKTCVVVPDLPPRKRRAGLTDVTNIGAKPRDKRVKQSQFEAKGVYQKKNTKLDSDVSVEVSSVQGGAKVMVESNDTIAAVSLDEEPTGHCMSNNIREHVMTDTALSMQESVDSGELQTSSSPNKDISMICEKPGASDCLTVVDIDKELKDSQVWSDYAPDIYCKARVTELEKRSSTNYMEKLQQDISPTMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSTCLIQKHKLQLLGVTCMFIASKYEEICAPRVEEFCFITDNTYTKAEVVKMEKEVLNLLRFQLSVPTTKTFLRRFIQAAQSSYKDPRVELEFLANYLAELTLVEYSFLQFLPSLVAASAVFLARWTLNHSEHPWTLTLEHYTNCKASELKTVVLAMKDLQLNTKGCPLNAIREKYKQEKFNCVANLSPKPVLSLF 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01261 470 SMART cyclin_7 345 433 IPR013763 -
Vivi3g01261 470 SMART cyclin_7 248 332 IPR013763 -
Vivi3g01261 470 SMART Cyclin_C_2 341 464 IPR004367 -
Vivi3g01261 470 PIRSF Cyclin_A_B_D_E 20 469 IPR046965 GO:0016538|GO:0044772
Vivi3g01261 470 Gene3D - 226 339 - -
Vivi3g01261 470 Pfam Cyclin, C-terminal domain 341 463 IPR004367 -
Vivi3g01261 470 CDD CYCLIN_AtCycA-like_rpt2 341 455 - -
Vivi3g01261 470 Gene3D - 212 460 - -
Vivi3g01261 470 FunFam Mitotic cyclin 6 226 326 - -
Vivi3g01261 470 SUPERFAMILY Cyclin-like 202 338 IPR036915 -
Vivi3g01261 470 ProSitePatterns Cyclins signature. 243 274 IPR006671 -
Vivi3g01261 470 MobiDBLite consensus disorder prediction 1 21 - -
Vivi3g01261 470 FunFam Cyclin A1 328 460 - -
Vivi3g01261 470 PANTHER CYCLINS 172 456 IPR039361 -
Vivi3g01261 470 Pfam Cyclin, N-terminal domain 212 339 IPR006671 -
Vivi3g01261 470 SUPERFAMILY Cyclin-like 340 464 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01261 Vivi-Chr3 21004823 21009373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01261 1 470 Core Cell Cycle Gene Families AT5G25380 50.206 1.06e-139 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01261 K06627 - gmx:100807750 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01261 3 21004823 21009373 Vivi3g01261 3 21004823 21009373 ECH
Vivi4g05045 4 181204277 181208696 Vivi3g01261 3 21004823 21009373 PCT