Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01260 ATGGAGGAAGAGAACAACGAAATCAAATCGTTCACAGATTTGGGCTTACCTGAGCAATTGGTGGAAGCTTGTCACAAATTGGGTTGGAAGGCACCGCTAAAATTTCAAATTCAAGCAATTCCCCTTGCACTACAAGGAGGAAAAGATGTGATTGGAGTTGCTGAACCGGGTTCTGGTAAGACTGGGGCTTTTGCTCTCCCTATATTGCATGCACTCTTACAAGCACCACAGCCAAACCATTTTTTTGCTTGTGTATTGTCTCCCACAAGGGACCTTGCTATACAAATTTCTCAACAGTTTGAAGCTTTAGGTTCTGGAATTGGTGTCAAATGTGTTGCGCTTGTTGGAGGCGCTGACTCTGACTTGCTACCCCAAATCATCAAGCTAGCAAAGATGCCTCATATTATTGTTGGGACTCCTAACCGTGTCTTGAATCACCTAAATCGCGCCAAAGATTTTTCTCTTTGTAAATTAAAATACTTGGTCTTAGATGACGCAGACAGGCTTTTGAATGAGGATTTTGTGGACTCACTTAATGAGATTTTAGAAATGATCCCTCGCGACCGGAGGATATTCCTTTTTTCTGCCACAATGACAAAGCAGGTCAAGAGGCTTCAAAGGGTTTGTTTAAGGAATCCTGTGAAGGCACAACCATAA 657 0.4262 MEEENNEIKSFTDLGLPEQLVEACHKLGWKAPLKFQIQAIPLALQGGKDVIGVAEPGSGKTGAFALPILHALLQAPQPNHFFACVLSPTRDLAIQISQQFEALGSGIGVKCVALVGGADSDLLPQIIKLAKMPHIIVGTPNRVLNHLNRAKDFSLCKLKYLVLDDADRLLNEDFVDSLNEILEMIPRDRRIFLFSATMTKQVKRLQRVCLRNPVKAQP 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01260 218 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 41 216 IPR014001 -
Vivi3g01260 218 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 9 216 - -
Vivi3g01260 218 Gene3D - 1 217 IPR027417 -
Vivi3g01260 218 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 9 37 IPR014014 GO:0003724
Vivi3g01260 218 SMART ultradead3 28 217 IPR014001 -
Vivi3g01260 218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 215 IPR027417 -
Vivi3g01260 218 Pfam DEAD/DEAH box helicase 35 205 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01260 Vivi-Chr3 20988971 20991051 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01260 11 203 Eukaryotic Initiation Factors Gene Family AT5G11200 35.897 5.52e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01260 K14777 - gmx:100775796 317.775