Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01250 ATGGCAAACCCTACAACTCACCATGTAATCATCGACATAGCAACAACAACAAATTCAAATTCTGAAGCTTCTCCTTCTTCTGTTGATGTTGTTTCCAATCAATCTTCAAATTCTAGGTTAACAAGAGGCGATGAGGTTTCTTTAGGACGTGTTTCCAGGACTCCGTTGAATTCAGGATTTTGTGTTTCTTTGGAATTTGTTTTTACGTTTACTCAGATTATTGCTTCTGTTGTTGTTCTTCGTTCGTCGAGAAATGAACATCCTCACGCTCCGTTGTTTGCTTGGATTGTTGGGTATGCTTCTGGATGCGTTGTTTCGCTTCCTTTGTTGTTGTGGAGGTATTTTTCTAGGGGAAATTCGGAGTCGAGAAGCTCGACAACGGTGGATGATCCTTCGGGGATTCTGCTTTCGAATCCGACTACGATCAGAGGGGAGGATGTTGTCCCTGTTTCATCGAATCAGGCTTCGTCGTTGTTCACGAATACGAGAATCAAGATACTTGTGGAATACATCAAAATCGTCCTAGATTTATTTTTTGCATCATGGTTTATTGTTGGAAACATATGGATATTTGGAGGGCAATCATCTGCTAATGAAGCTCCAAACTTATACCGGTTATGTGTAGTGTTTCTTACTTTTAGCTGCATCGGTTACGCATTGCCCTTCATTCTATGCTTAACAATATGCTGCTGTCTTCCCTGTATAATTTCCACTCTTGGGGTCAATGAGGATATGGCACAAACCAGAGGTGCAACCTCTGAATGCATTGATGCTTTACCAACTCACAAGTTCAAATTGAAGAAAAGCAAAAGCATAGATGAAAACACTCCGGCTGTTATTGAAGGTGGAGTTGTTTCCGGAGGAACCGAAAAGGAACGCATGATCTCCGGAGAAGATGCAGTTTGCTGCATATGCATAGCGAACTATGAAAACAACGATGAATTAAGAGAATTGCCTTGTTCACATCTTTTCCACAAAGATTGTGTAGACAAGTGGTTAAAGATAAATGCATTATGCCCCCTTTGCAAAAGGGAAGTTGGCAGGAATGAAACAGGACCGGTCATCGAGGAAAATGCCAGCCAACAAAGGGGCGAGAGCAGGATTGAGAACAGTCCTGCCAATACCCCGCCGTAA 1134 0.4215 MANPTTHHVIIDIATTTNSNSEASPSSVDVVSNQSSNSRLTRGDEVSLGRVSRTPLNSGFCVSLEFVFTFTQIIASVVVLRSSRNEHPHAPLFAWIVGYASGCVVSLPLLLWRYFSRGNSESRSSTTVDDPSGILLSNPTTIRGEDVVPVSSNQASSLFTNTRIKILVEYIKIVLDLFFASWFIVGNIWIFGGQSSANEAPNLYRLCVVFLTFSCIGYALPFILCLTICCCLPCIISTLGVNEDMAQTRGATSECIDALPTHKFKLKKSKSIDENTPAVIEGGVVSGGTEKERMISGEDAVCCICIANYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKREVGRNETGPVIEENASQQRGESRIENSPANTPP 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01250 377 SMART ring_2 302 342 IPR001841 -
Vivi3g01250 377 Pfam Ring finger domain 302 343 IPR001841 -
Vivi3g01250 377 FunFam E3 ubiquitin-protein ligase 285 352 - -
Vivi3g01250 377 MobiDBLite consensus disorder prediction 354 377 - -
Vivi3g01250 377 SUPERFAMILY RING/U-box 294 348 - -
Vivi3g01250 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 351 IPR013083 -
Vivi3g01250 377 MobiDBLite consensus disorder prediction 18 43 - -
Vivi3g01250 377 ProSiteProfiles Zinc finger RING-type profile. 302 343 IPR001841 -
Vivi3g01250 377 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 7 346 - -
Vivi3g01250 377 MobiDBLite consensus disorder prediction 353 377 - -
Vivi3g01250 377 MobiDBLite consensus disorder prediction 18 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01250 Vivi-Chr3 20894168 20897025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01250 42 352 C3H Transcription Factor Family AT1G80400 50.459 2.61e-117 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01250 - - gmx:100775815 459.914