Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01248 ATGGGTGTGGATTTCTATAACGTTTTGAAGGTTGAAAAAAATGCTACCGATGATGATTTGAAGAAAGCTTACAGAAAATTGGCCATGAAATGGCACCCTGATAAGAACCCTTCCAATAAGAAAGAAGCTGAAGCCAATTTCAAACAAATTTCTGAAGCTTATGCGATATTGAGTGATCCTCAAAGAAGGATGCTATATGATCAGCTTGGAGAACAAGGGTTAAAAGATAAGCCGCCGCCGGGGAATGATTCGTCGAGTGGTTTTAATCGGACTGCGGAGGATATCTTTACGGAATTCTTTGGGAGTAGTCCTTTGAATTTTGGGTCGTCTGGACCGGGAAGGTCCAAGAGATTCTCGTCTGATGGTGGAGGAAGTGTTCCGTTTGGTGGGTTCGGCGGAGATTTTAATTTTCGAACACAGAGCGAAAGGACGTATATGCCGAAGAAACCGTCGGCTGTGGAGACTAAATTGCTTTGTAGTTTGGAGGAGTTGTATTCTGGTTCTACTAGGAAAATGAAGATCTCGAGGACTGTAATGGATCCCAATGCCTACGGAAGGGAAATCAAAGAAACAGAGGTATTAAGCATTGAAGTAAAGCCAGGATGGAAGAAAGGGACAAAGATCACATTCCCGGATAAAGGGAATCAGCAATTGAATCAACTACCAGCAGATCTTGTATTTGTGATTGATGAGAAGCCTCACGAATCGTTCAAGAGAGATGGGAATGACCTCATTGTGACCCACAGGATAACACTAGCAGAAGCCATTGGAGGAACTTTAATAAATATAAAAACGCTCGACAAACGTATCGTTCGCGTTCAAGTGAAAGACATTGTGAGTCCTGGTTATGAGCTTATTGTTTCTAATGAAGGAATGCCAATAACAAAGGAACCTGGTCATAGGGGTCATTTGAAGATCATATTTGAGGTTAAGTTCCCTAAAAAATTGACATCAAACCAACGTGCTGCACTTAAGAGAGTTTTGGGAGGTTGA 993 0.4189 MGVDFYNVLKVEKNATDDDLKKAYRKLAMKWHPDKNPSNKKEAEANFKQISEAYAILSDPQRRMLYDQLGEQGLKDKPPPGNDSSSGFNRTAEDIFTEFFGSSPLNFGSSGPGRSKRFSSDGGGSVPFGGFGGDFNFRTQSERTYMPKKPSAVETKLLCSLEELYSGSTRKMKISRTVMDPNAYGREIKETEVLSIEVKPGWKKGTKITFPDKGNQQLNQLPADLVFVIDEKPHESFKRDGNDLIVTHRITLAEAIGGTLINIKTLDKRIVRVQVKDIVSPGYELIVSNEGMPITKEPGHRGHLKIIFEVKFPKKLTSNQRAALKRVLGG 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01248 330 FunFam Dnaj homolog subfamily b member 149 232 - -
Vivi3g01248 330 SUPERFAMILY HSP40/DnaJ peptide-binding domain 154 235 IPR008971 GO:0006457|GO:0051082
Vivi3g01248 330 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Vivi3g01248 330 Gene3D - 151 232 - -
Vivi3g01248 330 CDD DnaJ 4 59 IPR001623 -
Vivi3g01248 330 FunFam DnaJ subfamily B member 13 234 314 - -
Vivi3g01248 330 PRINTS DnaJ domain signature 42 62 IPR001623 -
Vivi3g01248 330 PRINTS DnaJ domain signature 24 39 IPR001623 -
Vivi3g01248 330 PRINTS DnaJ domain signature 62 81 IPR001623 -
Vivi3g01248 330 PRINTS DnaJ domain signature 6 24 IPR001623 -
Vivi3g01248 330 Gene3D - 233 329 - -
Vivi3g01248 330 SUPERFAMILY Chaperone J-domain 3 102 IPR036869 -
Vivi3g01248 330 Pfam DnaJ C terminal domain 153 313 IPR002939 -
Vivi3g01248 330 Pfam DnaJ domain 4 67 IPR001623 -
Vivi3g01248 330 CDD DnaJ_C 153 316 - -
Vivi3g01248 330 SUPERFAMILY HSP40/DnaJ peptide-binding domain 237 323 IPR008971 GO:0006457|GO:0051082
Vivi3g01248 330 Gene3D DnaJ domain 3 109 IPR036869 -
Vivi3g01248 330 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Vivi3g01248 330 SMART dnaj_3 3 62 IPR001623 -
Vivi3g01248 330 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01248 Vivi-Chr3 20880779 20882811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01248 6 74 C2H2 Transcription Factor Family AT1G74250 38.356 7.34e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01248 K09510 - gmx:100796426 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01248 3 20880779 20882811 Vivi3g01248 3 20880779 20882811 ECH