Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01239 ATGCAATTCAAATCAACGCAATCCTCATTTCGAGATCGCACACATGAATTCCACACCGTCGCAGAAAAATTGAAGAAATCACTATCATCAACCTCAAACGGAGCCACCACCAACACTCATCATCCTCCTTCTTCCTCTTCTCCTTCTTCGTCTTCCTCTTCCAGATCCGACGATCCCCGAACCGCCGTCGCAATTCAATCAGAGTTTAATCGAAGAGCTTCCAAGATTGGATATGGAATTCACCAAACCTCTATGAAACTCTCCAAGCTCGCAAAATTGGCGAAAAGGACTTCGGTTTTTGATGATCCAACTATGGAAATTCAGGAACTAACGAGTGTTATTAAGCAAGATATTACCGCGCTTAACTCTGCGGTTGTGGATCTTCAATTGGTCAGCAATTCTAGAAATGAGAGTGGGAATGTTTCTACAGATACGACTAGTCATTCGACGACGGTTGTGGATGATTTAAAGACGCGATTGATGAGCACTACGAAAGAGTTTAAAGATGTTCTCACCATGAGAACTGAGAACTTGAAAACGCATGAGAGTAGAAGACAATTGTTTTCGTCCACTGCTTCTAAGGAGTCTGCAAATCCTTTCATCCGTCAACGTCCTTTAGCTACAAAGTCTTCCGCTAGTAGTTCTAATGCTCCTGCACCACCTCCATGGGCTAGTGGGAAGCAGGTGGATGGGGAGAGTCAACCATTGCTGCAACAACAGCAGCAGCAGCAACAACAGGTAGTTCCATTGCAGGACACTTACATGCAAAGCAGGGCTGAAGCTCTTCAAAATGTTGAGTCTACTATTCACGAGCTCGGCAGCATCTTTAATCAACTAGCAACACTTGTCTCCCAGCAAGGAGAGATTGCCATCAGGATTGATGAGAACATGGATGATACTTTGACGAATGTAGAGGGGGCACAAGGGGCTTTGTTGAAGTATCTGAATAGCATATCTTCTAATAGGTGGCTGATGATCAAGATTTTCTTTGTTTTGATGTTTTTTCTTATGGTTTTCTTATTTTTTGTGGCGTAG 1035 0.4338 MQFKSTQSSFRDRTHEFHTVAEKLKKSLSSTSNGATTNTHHPPSSSSPSSSSSSRSDDPRTAVAIQSEFNRRASKIGYGIHQTSMKLSKLAKLAKRTSVFDDPTMEIQELTSVIKQDITALNSAVVDLQLVSNSRNESGNVSTDTTSHSTTVVDDLKTRLMSTTKEFKDVLTMRTENLKTHESRRQLFSSTASKESANPFIRQRPLATKSSASSSNAPAPPPWASGKQVDGESQPLLQQQQQQQQQVVPLQDTYMQSRAEALQNVESTIHELGSIFNQLATLVSQQGEIAIRIDENMDDTLTNVEGAQGALLKYLNSISSNRWLMIKIFFVLMFFLMVFLFFVA 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01239 344 MobiDBLite consensus disorder prediction 9 23 - -
Vivi3g01239 344 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 252 314 IPR000727 -
Vivi3g01239 344 FunFam Syntaxin-32 like 63 307 - -
Vivi3g01239 344 Pfam SNARE domain 288 340 IPR000727 -
Vivi3g01239 344 MobiDBLite consensus disorder prediction 205 243 - -
Vivi3g01239 344 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 8 26 IPR021538 -
Vivi3g01239 344 MobiDBLite consensus disorder prediction 1 61 - -
Vivi3g01239 344 MobiDBLite consensus disorder prediction 181 200 - -
Vivi3g01239 344 MobiDBLite consensus disorder prediction 24 61 - -
Vivi3g01239 344 MobiDBLite consensus disorder prediction 205 221 - -
Vivi3g01239 344 CDD SNARE_syntaxin5 255 328 - -
Vivi3g01239 344 MobiDBLite consensus disorder prediction 184 200 - -
Vivi3g01239 344 PANTHER SYNTAXIN 66 332 IPR045242 -
Vivi3g01239 344 ProSitePatterns Syntaxin / epimorphin family signature. 258 297 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vivi3g01239 344 SMART tSNARE_6 247 314 IPR000727 -
Vivi3g01239 344 SUPERFAMILY t-snare proteins 67 307 IPR010989 GO:0016020|GO:0016192
Vivi3g01239 344 Gene3D - 63 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01239 Vivi-Chr3 20796359 20801178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01239 1 344 SNARE and Associated Proteins AT3G24350 61.702 2.95e-143 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01239 K08490 - mnt:21390779 457.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01239 3 20796359 20801178 Vivi3g01239 3 20796359 20801178 ECH