Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01228 ATGGATAATCAAGCGAATCAGAATCAAGTTCAACCGCCACGTGACGAAGAAGAAGAAGATCCTTCGAAGATGGAGGAAGAAGAGTTAATCGCAAAGGTTAACAAACTCATGGATAAAATCACTTCTTCTCCTGATAACCCTAAACCTAACGTTCTGCATGCTCTTGCTTCCATTCTTGAAACTCAAGAGACTCGGTACATGGAAGATAATAGTCATTCTTCGTCTATCAATGCACGTGCTGCTCATAATATTGGACGTCTTGGTGGTATAATTCGGGAAAACGATGATTTCTTTGAGTTAGTATCTTTGAAGTTTCTATCAGAATCAGGATACTCAACTGCGGTTCGAGCTGCTGCTGTCAGACTTATCTTGTGCTGTTCTCTAACTTGGATTTATCCTCATGTTTTTGAAGAACCGGTTCTCGAGAACTTAAAAAATTGGGTTACTGATGATAGTACTAGGTCGTGGGCCGAGGAGCAAAATCTGAAACCTGAACTGGGAGAAAAGGAGGCCTCGGATTCTGAAATGTTGAAAGCATATTCTACTGGGCTCCTTGCCGTGTGCTTGGTCGGCGGAGGTCAAATAGTGGAAGATGTATTAACATCTGGCTTGTCAGCTAAGTTAATGCGTTATCTTCGTGTGCGTGTGCTGGGCGAGACAAGTGGCAGCCAGAAAGATATTAGTCATTTATCCGAAAACAAACATTCATCTGGGAATACTTCAGTAAGAGGTAGAGATGATGGTCGTGGAAGGTTTCGCCAGCTCCTGGAAATGAGTCATTTAGGTGATGCAAGGATTAATGAAGAAGGATCTTTAAATGACCAAGGTCCTGAACAGGGTCAGGATAGAAGTGTTAGTGGACAGGCTTGCCAAGAAGATCCCTGGATAGACGATGAACCTCCTGATGGACTCAGCAACAGTGCTGATGTTGGTGTGGTGGATTCTGATGGGGAGGATAGATGGCGTTGTAGAGATATTCGTGATGGCAGGATAAAATACGGTGAGCATGAAGACAATGGTAGGGACGAATCTGCAAGGCGGCGTACTAACCGTGGATGGGGAAGATCAAGGGGGAAAGGAAGGGCCAATGAAGGTCCAGTAGAAAGTGAACCCATTTTGTCATCTGCTGGTTCTGCCATTCGATTAGGACAGGGGCGGAGTGGTAGAGATAGGAGCTCTTTGAGGAACACTGACGTTAAACGAGTGCCTGATTCTAAAAAGGCTCTTACCGTTTCTGAAGCTTTGATTTCCGGAAGAGAGGATAGTGATCCTTGTTTCCAAGATTGCTGTGTTGGTAGTAAAGATATCTCTGATCTTGTTCGAAAAGCAGTCCAAGCCGCCGAAGCTGAAGCCAGATCAGACAATGCCCCTGAAGAAGCTGTCAAAGCAGCTGGTGATGCTGCTGCTGACCTTGTTAAAACTGCAGCTTTAGAGGAATACAAATCCACCAACAGTGAAGAGGTAGCTTTTTTGGCTGCTTCTAGAGCTGCATCAACGGTTATCGATGCTGCATCTGCTGTTGAAGTTTCAAGGAAATCTGTCTGCATTGATACTGAGACAGAGAATGTTAGTGGCAGAGAAACAGAATCTAGTGAGGATGTTGAAGATTATTTCATCCCAGACATTCTAATACTTACACAATTGAGGGAAAAATATTGCATTCAGTGTCTTGCGTTACTCGGAGAATATGTTGAAGTTCTTGGACCTGTATTGCACGAAAAGGGGGTTGATGTATGTCTTGGACTTTTGCAGCAAAGTTCTAAACATCAGGATCCATCCAAGGTTGCTTTCCTGTTGCCCGATGTCATGAAGCTGATATGTGCTTTGGCTGCCCATAGGAAATTTGCTGCACTATTTGTGGACCGTGGAGGAATGCAAAAGCTGCTTGCTGTACCTAGAATGGCTCAAACATTCTTTGGCCTTTCTTCTTGTCTATTTACTATTGGTTCCCTTCAGGGGATAATGGAACGAGTTTGCGCTCTTCCTTCTGATGTTATTTATCACGTAGTTGAGTTGGCTCTCCAACTCATTGAGTGTAATCAAGATCTTGCCCGGAAGAATGCAGCATTATTTTTTTCTGCCGCATTTGTCTTCAGAGCAGTACTCGATGCTTTTGACTCACAGGATGGCTTACAGAAATTACTGGGCCTTCTCAATGATGCTGTTTCCATAAGATCAGGAGTAACTTCTGGAGCCTTGGGCTCGTCTAACTCAGGATTACTTCGAAATGACAGAACATCATCTGCAGAAGTGCTGACATCATCTGAGAAGCAGGTAGCCTATCACACTTGTGTTGCTCTGCGGCAATATTTCAGAGCACACCTCCTATTATTAATAGATTCTATTCGTCCAAGCAAAGGCAAAAGTGCTGCTAGAAATATTCCAAGTACAAGGGCTGCTTACAAGCCACTTGATATTAGTAATGAGGCAATGGATAAAGTATTCACACAATTACAAAAAGATCGAAAGCTAGGTCCTGCATTTGTGAGAACAAGTTGGCGGGAAGTTGAAAAATTCTTGGCATCTAACGGGCATATTACTATGTTGGAATTGTGTCAGGCCCCAACTGTGGAGCGATATCTACATGATTTGCTTCAGTATGCATTGGGGGTTTTGCAAATTGTTACATTGGTACCTAGCAGTCGGAAGATGATTGTAAATGCTACATTAAGCACCAACCGGTCTGGTATTTATGTAATTTTGGATGCTGCAAATATTAGCAATAGTCATGTGGACCCTGAGATAATTCAATCAGCCTTAAATGTTTTAATCAACCTTGTTTGCCCCCCTCCTTCAATCAGCAATAAACCACCCGCAGTGTCACAAGGCCAGCAGTTTGCGTCTTCCCAAACCTCTAATGGTGCTCTCTCTGAGACTAGAGATAGATATGCTGACCGATCTGCTCATGGTGCCAGCCATATTGATCCTAGGGAGAGGAATGGAGAGTCCAGTGCTATAGATCGAGGCAATGCTGCAGCACTTGTTACACAATCTGTGAATAGTACTCCCCAAACTCCCGCTCCCTCTGCAAGCTCAGGCTTGGTTGGTGACCGGAGAATAACCCTGGGTGCAGGAGCACGCTGTGCCGGCCTTGCTACACAGCTGGAACAAGGATATCATCAGGCAAGAGAGGCTGTCTGTTCTAGTAATGGTATAAAGGTTCTTATACAAATCATCTCTTCGCGTGTATATTCATCTCCTGCTGCTCTGGACTGTCTCCGTGCTCTAGCTTGTCGAGTTCTGCTTGGATTAGCCAGAGATGACAATATTGCACATACATTGACAAAACTTCAGGTCGGGAAAAAAGTGTCTGACATAATTAGAGATTCAGGTAGCACAACACTCGGACCAGAGCAGGGTAGGTGGCAAGCTGAACTATCCCAGGCTGCAATTGAGTTAATTGGGATTGTGGCTAATTTAGGACGTGCAAGCACATTAGTTGCTAGTGATGCAGCTACTCCTACATTAAGGCGCATTGAAAGAGCTGCTATAGCTGCCGCCACGCCTATTACTTACCCTTCAAGCGAACTCTTGCTCTTAATTCATGAACACTTACAGGCATCTGGATTGGGGCAAACTGCTTCTTTATTGCTTAAAGAGGCTCAGTTAACTCCTTTGTCATCATTACTTGCTCCATCTTCTCTAGCACAACAACCCACAACACAAGAAGCTTCTTCAATACAGGTTCAGTGGCCTTCTGGTCGTACTCCTAGTGGCTTTCTCACCAGTAAATTAAAGTCTAATTCAAAGAATGAAGATACTTGTTTGAAAAGTGATGCTTTCTCTGCAAAGAAAAAGTCACTAACTTTCTCATCGTCTTTTGGTTCCCATACAAGACACCAAGTCATTGACTCTCAGCAGTCATCAGCCAGAAAATGGTTACGTACTGGGAAAGACTCTTCAGAAACTTGTATAATAGAGAACTCATCTGAATCTTCAGTGAAACATAACACTGAAACTGGACCTCAGTTTAAGACTCCAGTCACCTTGCCGTCCAAACGGAAGTTATCGGATTTAAAGGATATACCAATGTTATCATCATCTGGAAAGCGACTAAATGTTGGGGATCCGGGTCTTCGCTCTCCTATTTCCTCAATTGCAGTTCGTAAAAGCAGCCTGCATACTGATGCTGTTGGGCTTTTCACACCAACTAGTAATCTGAGGAGTCATCATGGCCGTTGTACAGCTGACAATGTGGATGAGAATCAGTACTGCATCTCTAGTCTAGCTCAGACAACACCATCCTCCCAAGTAGTAAATGATGTCCAGCCCAACAACCTTGAGCGCATAACACTAGATTCTCTGGTGGTTCAGTATCTGAAACATCAGCATCGCCAATGCCCAGCCCCCATTACCACCCTTCCTCCAATATCTCTGCTGCACCCACATGTTTGTCCTGAACCTAAACGAAGCCTCGATGCCCCCTCTAATGTGACTGCTCGCCTTGGTACTCGCGAATATAAGTTTATGTATGGTGGAGTACATGGTAATCGCAGGGATCGTCAATTTGTTTTCAGCCGGTTTAGGCCATGGCGCACTTATCGGGACGATGCCGGTGCATTATTTACTTGCATTACATTTGTTGGAGACTCTTCCCATATTGCTGTGGGTAGCCATACTGGAGAACTCAAATTTTTTGATTCCAACAACAGTAACGTAGTAGAGAGCTTCACAGGTCACCAGTCTCCATTGACCCTAATTCAGTCATATGTGTCTGGTGAGACTCAATTGTTGCTTTCTTCATGCTCTCAAGATGTTAAGCTGTGGGATGCAACATCGATATTAGGTGGTCCCACCCGTTCATTTGAAGGATGCAAGGCTGCAAGGTTTAGTAACTCTGGGAATACTTTTGCCGCCCTGTCATCAGAATCTACAGGGCGGGAAATCCTTTTGTATGATATTGAAAGTTACCAATTAAAAGAGAAGTTGTCTGATACATCAACTATTTCTACAGGGCGGGGTCATGTTTATTCTTTAATCCACTTTAGCCCCGCCGATTCAATGCTGCTTTGGAATGGTGTCCTATGGGACCCGCGGGTGTCTACGCCTGTTCATCGCTTTGATCAGTTCACCGATTATGGCGGTGGAGGTTTTCATCCTGCTGGAAATGAGGTTATTATAAACTCTGAAGTATGGGATCTCCGAAAATTCAGACTTCTACGTAGTGTAGCTTCACTAGATCAGACATCAATAACATTCAATGCCCGAGGTGATGTTATGTATGCAATGTTAAGGAGAAATATTGAGGATGTAATGTCTGCAATGCATGCACGTCGTGTCAAGCACCCGCTGTTTTCAGCTTTCCGCACGGTGGATGCAATAAATTATTCTGACATTTCTACTACCCCTGTGGATCGCTGTGTTCTTGATTTTGCAACTGAGCCAACAGATTCATTTATTGGCTTGATTACCATGGATGATCAAGGCGAGATGTATTCATCAGCCAGATCGTATGAAATTGGTCGTCGGAGGCCAACTGATGACGATTCTGATCCCGATGATGCTGAAAGTGAGGAAGAAGATGAAGATGAGGACGATGATGATGAAGATCCTCTTTTAGGCCCTGGCTTTGGTGGGGAAAGCGACAGTGATGCTGAAGACATGAGCAATGATGATGATAGTGCAAGTGATCCGGATGATGACGACGATGAAGAGGGAGGTTTCATAATGAATGATGTAGACTTTGATGGAGAAGGAGACTTGTTAGATATGGTAAGCGATGGTGATGATGAGGACGATGATGACAGTCAAGGACTTTCCGGGAGTAGTGACGATTATGACTTTGGTTATTAA 5793 0.4409 MDNQANQNQVQPPRDEEEEDPSKMEEEELIAKVNKLMDKITSSPDNPKPNVLHALASILETQETRYMEDNSHSSSINARAAHNIGRLGGIIRENDDFFELVSLKFLSESGYSTAVRAAAVRLILCCSLTWIYPHVFEEPVLENLKNWVTDDSTRSWAEEQNLKPELGEKEASDSEMLKAYSTGLLAVCLVGGGQIVEDVLTSGLSAKLMRYLRVRVLGETSGSQKDISHLSENKHSSGNTSVRGRDDGRGRFRQLLEMSHLGDARINEEGSLNDQGPEQGQDRSVSGQACQEDPWIDDEPPDGLSNSADVGVVDSDGEDRWRCRDIRDGRIKYGEHEDNGRDESARRRTNRGWGRSRGKGRANEGPVESEPILSSAGSAIRLGQGRSGRDRSSLRNTDVKRVPDSKKALTVSEALISGREDSDPCFQDCCVGSKDISDLVRKAVQAAEAEARSDNAPEEAVKAAGDAAADLVKTAALEEYKSTNSEEVAFLAASRAASTVIDAASAVEVSRKSVCIDTETENVSGRETESSEDVEDYFIPDILILTQLREKYCIQCLALLGEYVEVLGPVLHEKGVDVCLGLLQQSSKHQDPSKVAFLLPDVMKLICALAAHRKFAALFVDRGGMQKLLAVPRMAQTFFGLSSCLFTIGSLQGIMERVCALPSDVIYHVVELALQLIECNQDLARKNAALFFSAAFVFRAVLDAFDSQDGLQKLLGLLNDAVSIRSGVTSGALGSSNSGLLRNDRTSSAEVLTSSEKQVAYHTCVALRQYFRAHLLLLIDSIRPSKGKSAARNIPSTRAAYKPLDISNEAMDKVFTQLQKDRKLGPAFVRTSWREVEKFLASNGHITMLELCQAPTVERYLHDLLQYALGVLQIVTLVPSSRKMIVNATLSTNRSGIYVILDAANISNSHVDPEIIQSALNVLINLVCPPPSISNKPPAVSQGQQFASSQTSNGALSETRDRYADRSAHGASHIDPRERNGESSAIDRGNAAALVTQSVNSTPQTPAPSASSGLVGDRRITLGAGARCAGLATQLEQGYHQAREAVCSSNGIKVLIQIISSRVYSSPAALDCLRALACRVLLGLARDDNIAHTLTKLQVGKKVSDIIRDSGSTTLGPEQGRWQAELSQAAIELIGIVANLGRASTLVASDAATPTLRRIERAAIAAATPITYPSSELLLLIHEHLQASGLGQTASLLLKEAQLTPLSSLLAPSSLAQQPTTQEASSIQVQWPSGRTPSGFLTSKLKSNSKNEDTCLKSDAFSAKKKSLTFSSSFGSHTRHQVIDSQQSSARKWLRTGKDSSETCIIENSSESSVKHNTETGPQFKTPVTLPSKRKLSDLKDIPMLSSSGKRLNVGDPGLRSPISSIAVRKSSLHTDAVGLFTPTSNLRSHHGRCTADNVDENQYCISSLAQTTPSSQVVNDVQPNNLERITLDSLVVQYLKHQHRQCPAPITTLPPISLLHPHVCPEPKRSLDAPSNVTARLGTREYKFMYGGVHGNRRDRQFVFSRFRPWRTYRDDAGALFTCITFVGDSSHIAVGSHTGELKFFDSNNSNVVESFTGHQSPLTLIQSYVSGETQLLLSSCSQDVKLWDATSILGGPTRSFEGCKAARFSNSGNTFAALSSESTGREILLYDIESYQLKEKLSDTSTISTGRGHVYSLIHFSPADSMLLWNGVLWDPRVSTPVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLRSVASLDQTSITFNARGDVMYAMLRRNIEDVMSAMHARRVKHPLFSAFRTVDAINYSDISTTPVDRCVLDFATEPTDSFIGLITMDDQGEMYSSARSYEIGRRRPTDDDSDPDDAESEEEDEDEDDDDEDPLLGPGFGGESDSDAEDMSNDDDSASDPDDDDDEEGGFIMNDVDFDGEGDLLDMVSDGDDEDDDDSQGLSGSSDDYDFGY 1930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01228 1930 ProSiteProfiles LIS1 homology (LisH) motif profile. 1173 1205 IPR006594 GO:0005515
Vivi3g01228 1930 MobiDBLite consensus disorder prediction 935 984 - -
Vivi3g01228 1930 MobiDBLite consensus disorder prediction 391 407 - -
Vivi3g01228 1930 MobiDBLite consensus disorder prediction 1864 1920 - -
Vivi3g01228 1930 MobiDBLite consensus disorder prediction 333 407 - -
Vivi3g01228 1930 MobiDBLite consensus disorder prediction 223 238 - -
Vivi3g01228 1930 MobiDBLite consensus disorder prediction 333 350 - -
Vivi3g01228 1930 MobiDBLite consensus disorder prediction 937 958 - -
Vivi3g01228 1930 MobiDBLite consensus disorder prediction 263 315 - -
Vivi3g01228 1930 MobiDBLite consensus disorder prediction 959 984 - -
Vivi3g01228 1930 MobiDBLite consensus disorder prediction 223 248 - -
Vivi3g01228 1930 FunFam DDB1-and CUL4-associated factor homolog 1 1505 1832 - -
Vivi3g01228 1930 MobiDBLite consensus disorder prediction 1 26 - -
Vivi3g01228 1930 MobiDBLite consensus disorder prediction 272 288 - -
Vivi3g01228 1930 SMART WD40_4 1550 1590 IPR001680 GO:0005515
Vivi3g01228 1930 SMART WD40_4 1507 1547 IPR001680 GO:0005515
Vivi3g01228 1930 SMART WD40_4 1595 1633 IPR001680 GO:0005515
Vivi3g01228 1930 Gene3D - 1508 1832 IPR015943 GO:0005515
Vivi3g01228 1930 MobiDBLite consensus disorder prediction 1816 1930 - -
Vivi3g01228 1930 MobiDBLite consensus disorder prediction 1831 1853 - -
Vivi3g01228 1930 PANTHER VPRBP PROTEIN-RELATED 21 1924 IPR033270 GO:0016567
Vivi3g01228 1930 SUPERFAMILY ARM repeat 555 1132 IPR016024 -
Vivi3g01228 1930 SMART Lish 1173 1205 IPR006594 GO:0005515
Vivi3g01228 1930 SUPERFAMILY WD40 repeat-like 1519 1741 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01228 Vivi-Chr3 20618901 20627935 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01228 1534 1740 U-box Gene Family AT2G33340 23.767 6.19e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01228 K11789 - gmx:100796030 2755.7