Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01219 ATGACGATTCCATCTCTGGTTAGAAGACGTTCAAGTGGTGAAATAAGAAACTTGGCCTCAATTTCCAACAGTCTGTTACCAGCATTTGGCACTAATCCTGATGAAGGTTACTTCAACCTCAAGAAATATACCATTGCTCCTTATGATCGAAGATATCGATTGTGGCAAACGTTCCTAGTGGCATTAGTGGTGTATTCTGCATGGGCATCTCCATTTGAATTGGCTTTCAGAGAGATGTCAATCGGGTCGCTGTTGATAGCTGATCTCTTTGTCGATGCTTTCTTTGCATTTGACATAATTCTAACTTTCTTTGTGGCTTACTTGGATACATCAACGTATTTCCTTGTTGATGACCATAAGAAGATTGCTATCAGGTATGTCAAACATTTATATTTTCCCATGGATCTAGCTTCCACTCTGCCATTTCAGCAGATCTATCAACTTATAGCCGGCAAATCACACGATAGAGGGGAAGTCTTTGGTTTTCTTAACATGCTTAGACTCTGGCGATTGAGACGTGTTAGCGAGCTCTTCTCAAGGCTAGAGAAAGACATAAGGGTTAGCTACTCGTTAACAAGAGTTTGTAAACTTTTGTGCGTTACGCTATTTGCAGTGCATTTCACAGGCTGCGTGTATTTTTGGTTGGCTTACCATCACGAATCACCCGAAAATACATGGATTGGAAAGGAGGTAGAGGATTTTAAGCAAAGGAGTGTAGGGTCGGGATATACTTACTCCATGTATTGGTCTATTGTAACCCTTACTACAGTTGGTTATGGAGATTTGCATGCAGAAAATACAACTGAGAAGGTTTTCAATATATTTTATATGCTGTTTAACATCGGCCTCACTGCATATATTATCGGAAACATGACAAATTTGGTGGTTCATAGCTCTGTCCGAACCTTTGCCATGAGGGATGCCTTCAATAAAATATTACAATATGCGAGCAAAAATGGACTCCCGGTAGGATTGAAGGAGCAAATGTTGGCACATACACAACTGAAGTTTAAAACAGCAGAGTTACAGCAAGAAGAAGTGTTACAGGACCTACCTAAAGCAATTAGAGCCGGTATTGCTCAGCATCTTTTCCACAATGTGATTGAAAAAACATATTTATTTAAAGGAGTCTCAGATGATTTTATTTCCCAGCTGGTATCGGATATGAAAGCAGAATACTACCCATCAAAGGTTGACATTATCTTGCAAAATGAGATGCCAGCATATTTCTACATTTTGGTATCCGGATCGGTGGATGTTTTGATATACAAGAATGGATCTGAAAAGTTTTTGTTCAAACTAGAGCCTGGAAGCATGGTAGGAGAAATAGGTGTGATGTTTAATATCCCGCAACCTTATACAGTGAGAAGTAGAAGACTCTCCCAGCTCATACGAATCGATCATCATCATTTCAAGCAGATGGCAAAACCATTTAATGAAGATGGGAAGGCAGTCATCAACAATTTTACTCAGTTTTTGAAGGGACTAAGAGGCGGGGTGCTGGAAGAAGTACCATTCGTAACAGAATTTCTGAGTGACTTGCATGACGAGGAACAGACACAAAACGAGGGCACACAAGATGAAGCTTCAGAGTATCATGAAGAAGAACAAACAGAAAATTCCAGTCCACTGTCAAGCCTAGTTCCTATCAGAGTCAAAATCCACGGACACCACCCCAATGGAAAAAACGAAATTGGAACAACACCAAAGCTCATTATTCTACCAGATTCAGTTGAAGATCTTTTCAGAGTAGCAGAGAACAAGTTTGGAAAAAGAGGAAGCAAAATTCTTATGACCGACTGCTCAGAAGTAGAAGATCTAAGCGCCTTAAGAGAGAATGACGAGTTATATATCATCTAA 1860 0.3989 MTIPSLVRRRSSGEIRNLASISNSLLPAFGTNPDEGYFNLKKYTIAPYDRRYRLWQTFLVALVVYSAWASPFELAFREMSIGSLLIADLFVDAFFAFDIILTFFVAYLDTSTYFLVDDHKKIAIRYVKHLYFPMDLASTLPFQQIYQLIAGKSHDRGEVFGFLNMLRLWRLRRVSELFSRLEKDIRVSYSLTRVCKLLCVTLFAVHFTGCVYFWLAYHHESPENTWIGKEVEDFKQRSVGSGYTYSMYWSIVTLTTVGYGDLHAENTTEKVFNIFYMLFNIGLTAYIIGNMTNLVVHSSVRTFAMRDAFNKILQYASKNGLPVGLKEQMLAHTQLKFKTAELQQEEVLQDLPKAIRAGIAQHLFHNVIEKTYLFKGVSDDFISQLVSDMKAEYYPSKVDIILQNEMPAYFYILVSGSVDVLIYKNGSEKFLFKLEPGSMVGEIGVMFNIPQPYTVRSRRLSQLIRIDHHHFKQMAKPFNEDGKAVINNFTQFLKGLRGGVLEEVPFVTEFLSDLHDEEQTQNEGTQDEASEYHEEEQTENSSPLSSLVPIRVKIHGHHPNGKNEIGTTPKLIILPDSVEDLFRVAENKFGKRGSKILMTDCSEVEDLSALRENDELYII 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01219 619 PANTHER POTASSIUM CHANNEL AKT1 18 494 IPR045319 GO:0005249|GO:0006813
Vivi3g01219 619 SUPERFAMILY cAMP-binding domain-like 302 492 IPR018490 -
Vivi3g01219 619 PRINTS EAG/ELK/ERG potassium channel family signature 243 260 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi3g01219 619 PRINTS EAG/ELK/ERG potassium channel family signature 88 98 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi3g01219 619 PRINTS EAG/ELK/ERG potassium channel family signature 269 280 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi3g01219 619 PRINTS EAG/ELK/ERG potassium channel family signature 99 108 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi3g01219 619 PRINTS EAG/ELK/ERG potassium channel family signature 287 296 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi3g01219 619 Coils Coil 515 535 - -
Vivi3g01219 619 Pfam Ion transport protein 53 297 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vivi3g01219 619 ProSiteProfiles cAMP/cGMP binding motif profile. 373 492 IPR000595 -
Vivi3g01219 619 SUPERFAMILY Voltage-gated potassium channels 47 295 - -
Vivi3g01219 619 Pfam KHA, dimerisation domain of potassium ion channel 551 618 IPR021789 -
Vivi3g01219 619 Pfam Cyclic nucleotide-binding domain 395 475 IPR000595 -
Vivi3g01219 619 Gene3D Jelly Rolls 338 495 IPR014710 -
Vivi3g01219 619 MobiDBLite consensus disorder prediction 515 546 - -
Vivi3g01219 619 FunFam Potassium channel KAT2 361 497 - -
Vivi3g01219 619 Gene3D - 53 297 - -
Vivi3g01219 619 CDD CAP_ED 373 486 IPR000595 -
Vivi3g01219 619 FunFam Potassium channel KAT3 54 297 - -
Vivi3g01219 619 ProSiteProfiles KHA domain profile. 551 619 IPR021789 -
Vivi3g01219 619 SMART cnmp_10 373 490 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01219 Vivi-Chr3 20502421 20508165 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01219 8 618 Ion Channels AT4G32650 59.390 0.0 705
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01219 K21867 - gmx:100794620 905.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01219 3 20502421 20508165 Vivi3g01219 3 20502421 20508165 ECH