Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01216 ATGGAGTTTGAATTGATGGAATTCCCAAACAAAGATGAAAAGAAAGCAATTCTAGAAACCGCTTCAGATAGCATAAACTCACTCAACAACTTCGTCGATTTTCTCTCTCATAAACCTTCTCATCTAAACTCCGATCTCACAAACACCACCGTAACAAACTTCAAAAAACTCTCCAACTTACTCAACCGTACCGGCCGCGCCCGCTTCCGTCGTGCACCCCTCCCTCAACCACCACAAAACCTCACTCCAACTCCCACTCCCACTCCCTCCACCTCCACACCACCACTTCAAGTTCAACCTCCTCAACCTCCCCAGAACCATTCTTTAACTCTCGATTTCACTAAACCGAACGTTTTCCGATCTAACCCTAAATCCTTAGATCTAGAATTCCATAAAGAAGCCTTCAGTGTTTCCTCTAACTCCTCATTCTTGTCCTCCGCTATCACCGGTGACATCACCGGCGACGGCAGTGTTTCTAACGGTAAACAAGGTTCATCTCTCTTCCTCAACACCATCTCCGCCGCAAAACCTCCTCTTTCATCTACATCATTGAAGAACAATTGCCACCACGAGCACTCCGATAACGTCTCCGGCAAACGCTCCGGTTCTAATAAGTGCCACTGCATCAAGAAAAGGAAAAATCGGATGAAGAGAACGGTGAGGGTACCGGCGGTGAGTTCGAGGATAGCGGATATACCGGCGGATGAATATTCGTGGAGGAAGTATGGTCAGAAGCCGATAAAGGGATCAGCGTATCCAAGGGGGTATTATAGATGCAGTACAGTGAAAGAGTGTCCAGCGAGGAAAAAGGTGGAGAGGGCGATGGATGATCCAACGATGCTGATTGTAACGTATGAGGAGGAGCATCGGCATGAGATTCATACTGCGATGCAGGAGAATATTTCCGGTTCCGGGAGCATGGGTTTGGTGGTGTTTGAGTCAACGTTAGGTGGGAATTAG 960 0.476 MEFELMEFPNKDEKKAILETASDSINSLNNFVDFLSHKPSHLNSDLTNTTVTNFKKLSNLLNRTGRARFRRAPLPQPPQNLTPTPTPTPSTSTPPLQVQPPQPPQNHSLTLDFTKPNVFRSNPKSLDLEFHKEAFSVSSNSSFLSSAITGDITGDGSVSNGKQGSSLFLNTISAAKPPLSSTSLKNNCHHEHSDNVSGKRSGSNKCHCIKKRKNRMKRTVRVPAVSSRIADIPADEYSWRKYGQKPIKGSAYPRGYYRCSTVKECPARKKVERAMDDPTMLIVTYEEEHRHEIHTAMQENISGSGSMGLVVFESTLGGN 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01216 319 FunFam WRKY transcription factor 65 217 294 - -
Vivi3g01216 319 SMART WRKY_cls 233 293 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi3g01216 319 MobiDBLite consensus disorder prediction 183 205 - -
Vivi3g01216 319 Pfam Plant zinc cluster domain 185 231 IPR018872 -
Vivi3g01216 319 ProSiteProfiles WRKY domain profile. 228 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi3g01216 319 Pfam WRKY DNA -binding domain 235 292 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi3g01216 319 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 17 293 IPR044810 GO:0003700
Vivi3g01216 319 SUPERFAMILY WRKY DNA-binding domain 231 293 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi3g01216 319 Gene3D WRKY domain 217 293 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi3g01216 319 MobiDBLite consensus disorder prediction 76 102 - -
Vivi3g01216 319 MobiDBLite consensus disorder prediction 69 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01216 Vivi-Chr3 20371386 20373236 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01216 1 310 WRKY Transcription Factor Family AT2G24570 54.434 3.15e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi3g01216 WRKY 9.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01216 - - gmx:100127394 358.607