Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01195 ATGACTACTTTTCCAAATCAGCTTCGACTATTTAAGTCAAATATTTTGGATTATAGCTCTATTCTCCCGGCAGTTGTGGGATGCAGAGGTGTTTTCCACCTTGCTTGTCCTATTTCGTTTGGTCACGTTAAAAATCCTTTGGAGGAAGTAATTGAACCTGCGATCCAAGGAACATGCAATGTACTTCAAGCTTGTAAAATTGCTAATGTCAAACGAATAGTGTATGTTTCATCGGGGGCTGCCATAATAAAAAATCCCTATTTTCCAAAAACTGGACCCATTAATGAGTTAAGTTGGTCTAATGGAGATTTCTGCCTAAAATATAAGAGGTGGTATTGCTACGCCAAGACAATGGCAGAAAAGAATGCAGTGGAAATTGCAAAAAGAGATGCGCTTGATTTAATTAGCATTTGCCCTACTCATGTTATGGGACCATTGTCAGAGTCACCCACTAATGCTAATGTTGCATATAGAATTTTTGGTACTAGGCCTAGAGTTTGTTTTCATTATAGTGAGTGA 519 0.3815 MTTFPNQLRLFKSNILDYSSILPAVVGCRGVFHLACPISFGHVKNPLEEVIEPAIQGTCNVLQACKIANVKRIVYVSSGAAIIKNPYFPKTGPINELSWSNGDFCLKYKRWYCYAKTMAEKNAVEIAKRDALDLISICPTHVMGPLSESPTNANVAYRIFGTRPRVCFHYSE 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01195 172 Gene3D - 2 166 - -
Vivi3g01195 172 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 10 147 IPR002225 GO:0003854|GO:0006694|GO:0016616
Vivi3g01195 172 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 150 IPR036291 -
Vivi3g01195 172 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 7 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01195 Vivi-Chr3 20060755 20063556 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01195 6 151 Monolignol Biosynthesis Gene Families AT2G33590 51.370 1.93e-49 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01195 - - vvo:131660556 360.147