Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01179 ATGGGTGTGGATTTCTATAACGTTTTGAAGGTTGAAAAAAATGCTACCGATGATGATTTGAAGAAAGCTTACAGAAAATTGGCCATGAAATGGCACCCTGATAAGAACCCTTCCAATAAAAAAGAAGCTGAAGCCAATTTCAAACAAATTTCTGAAGCTTATGCGATATTGAGTGATCCTCAAAGAAGGATGCTATATGATCAGCTTGGAGAACAAGGGTTAAAAGATAAGCCGCCGCCGGGGAATGATTCGTCGAGTGGTTTTAATCGAACTGCGGAGGATATCTTTACGGAATTCTTTGGGAGTAGTCCTTTGAATTTTGGATCGTCTGGACCGGGAAGGTCCAAGAGATTCTCGTCTGATGGTGGAGGAAGTGTTCCGTTTGGTGGGTTCGGCGGAGATTTTAATTTTCGGACACAGAGCGAAAGGACGTATATGCCGAAGAAACCGTCGGCTGTGGAGACTAAATTGCTTTGTAGTTTGGAGGAGTTGTATTCTGGTTCTACTAGGAAAATGAAGATCTCGAGGACTGTAATGGATCCCAATGCCTACGGAAGGGAAATCAAAGAAACAGAGGTATTAAGCATTGAAGTAAAGCCAGGATGGAAGAAAGGGACAAAGATCACATTCCCGGATAAAGGGAATCAGCAATTGAATCAACTACCAGCAGATCTTGTATTTGTGATTGATGAGAAGCCTCACGAATCGTTCAAGAGAGATGGGAATGACCTTATTGTGACCCACAGGATAACACTAGCAGAAGCCATTGGAGGAACTTTAATAAATATAAAAACGCTCGACAAACGTATCGTACGCGTTCAAGTGAAAGACATTGTGAGTCCTGGTTATGAGCTTATTGTTTCTAATGAAGGAATGCCAATAACAAAGGAACCTGGTCATAGGGGTCATTTGAAGATCATATTTGAGGTTAAGTTCCCTAAAAAATTGACATCAAGCCAACGTGCTGCACTTAAGAGAGTTTTGGGAGGTTGA 993 0.4169 MGVDFYNVLKVEKNATDDDLKKAYRKLAMKWHPDKNPSNKKEAEANFKQISEAYAILSDPQRRMLYDQLGEQGLKDKPPPGNDSSSGFNRTAEDIFTEFFGSSPLNFGSSGPGRSKRFSSDGGGSVPFGGFGGDFNFRTQSERTYMPKKPSAVETKLLCSLEELYSGSTRKMKISRTVMDPNAYGREIKETEVLSIEVKPGWKKGTKITFPDKGNQQLNQLPADLVFVIDEKPHESFKRDGNDLIVTHRITLAEAIGGTLINIKTLDKRIVRVQVKDIVSPGYELIVSNEGMPITKEPGHRGHLKIIFEVKFPKKLTSSQRAALKRVLGG 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01179 330 FunFam DNAJ heat shock family protein 233 328 - -
Vivi3g01179 330 FunFam Dnaj homolog subfamily b member 149 232 - -
Vivi3g01179 330 SUPERFAMILY HSP40/DnaJ peptide-binding domain 154 235 IPR008971 GO:0006457|GO:0051082
Vivi3g01179 330 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Vivi3g01179 330 CDD DnaJ 4 59 IPR001623 -
Vivi3g01179 330 PRINTS DnaJ domain signature 42 62 IPR001623 -
Vivi3g01179 330 PRINTS DnaJ domain signature 24 39 IPR001623 -
Vivi3g01179 330 PRINTS DnaJ domain signature 62 81 IPR001623 -
Vivi3g01179 330 PRINTS DnaJ domain signature 6 24 IPR001623 -
Vivi3g01179 330 SUPERFAMILY Chaperone J-domain 3 102 IPR036869 -
Vivi3g01179 330 Pfam DnaJ C terminal domain 153 313 IPR002939 -
Vivi3g01179 330 Pfam DnaJ domain 4 67 IPR001623 -
Vivi3g01179 330 SUPERFAMILY HSP40/DnaJ peptide-binding domain 237 323 IPR008971 GO:0006457|GO:0051082
Vivi3g01179 330 CDD DnaJ_C 153 316 - -
Vivi3g01179 330 Gene3D - 151 232 - -
Vivi3g01179 330 Gene3D DnaJ domain 3 109 IPR036869 -
Vivi3g01179 330 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Vivi3g01179 330 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 328 - -
Vivi3g01179 330 SMART dnaj_3 3 62 IPR001623 -
Vivi3g01179 330 Gene3D - 233 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01179 Vivi-Chr3 19724543 19726622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01179 6 74 C2H2 Transcription Factor Family AT1G74250 38.356 8.17e-09 55.1