Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01171 ATGCAATTCAAATCAACGCAATCCTCATTTCGAGATCGCACACATGAATTCCACACCGTCGCAGAAAAATTGAAGAAATCTCTATCATCAACCTCAAACGGAGCCACCACTAGCACTCATCATCCTCCTTCTTCCTCTTCTCCTTCTTCTTCCTCTTCCAGATCCGACGATCCTCGATCTGCCGTCGCAATTCAATCGGAGTTTAATCGAAGAGCTTCCAAGATTGGATATGGAATTCACCAAACCTCTCAGAAACTCTCCAAGCTCGCCAAATTGGCGAAAAGGACTTCGGTTTTTGATGATCCAACTATGGAAATTCAGGAACTAACGAGTGTTATTAAACAAGATATTACCGCGCTTAACTCTGCGGTTGTGGATCTTCAATTGGTCAGCAATTCTAGAAATGAGAGTGGGAATGTTTCTACAGATACGACTAGTCATTCGACGACGGTTGTGGATGATTTAAAGACGCGGTTGATGAGCACCACTAAAGAGTTTAAAGATGTTCTCACCATGAGAACTGAGAACTTGAAAACGCACGAGAGTAGAAGACAATTGTTTTCGTCCACTGCTTCCAAGGAGTCTGCAAATCCTTTCATCCGTCAACGTCCTTTAGCTACAAAGTCTTCTGCTAGTAGTTCTAATGCTCCTGCACCACCTCCATGGGCTAGTGGGAAGCAAGTGGATGGGGAGAGTCAACCATTGCTGCAACAACAGCAGCAACAGCAACAACAGGTAGTTCCATTGCAGGACACTTACATGCAAAGCAGGGCTGAAGCTCTTCAAAATGTCGAGTCTACTATTCACGAGCTCGGAAGCATCTTTAATCAACTAGCAACACTTGTCTCCCAGCAAGGAGAGATTGCCATCAGGATTGATGAGAACATGGATGATACTTTGACGAATGTAGAGGGGGCACAAGGGGCTTTGTTGAAGTATCTGAATAGCATATCTTCTAATAGGTGGCTGATGATCAAGATTTTCTTTGTTTTGATGTTTTTTCTTATGGTTTTCTTATTTTTTGTGGCGTAG 1032 0.4331 MQFKSTQSSFRDRTHEFHTVAEKLKKSLSSTSNGATTSTHHPPSSSSPSSSSSRSDDPRSAVAIQSEFNRRASKIGYGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTSVIKQDITALNSAVVDLQLVSNSRNESGNVSTDTTSHSTTVVDDLKTRLMSTTKEFKDVLTMRTENLKTHESRRQLFSSTASKESANPFIRQRPLATKSSASSSNAPAPPPWASGKQVDGESQPLLQQQQQQQQQVVPLQDTYMQSRAEALQNVESTIHELGSIFNQLATLVSQQGEIAIRIDENMDDTLTNVEGAQGALLKYLNSISSNRWLMIKIFFVLMFFLMVFLFFVA 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01171 343 MobiDBLite consensus disorder prediction 9 23 - -
Vivi3g01171 343 ProSitePatterns Syntaxin / epimorphin family signature. 257 296 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vivi3g01171 343 MobiDBLite consensus disorder prediction 204 242 - -
Vivi3g01171 343 Gene3D - 61 306 - -
Vivi3g01171 343 SMART tSNARE_6 246 313 IPR000727 -
Vivi3g01171 343 FunFam Syntaxin-32 like 62 306 - -
Vivi3g01171 343 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 8 26 IPR021538 -
Vivi3g01171 343 MobiDBLite consensus disorder prediction 180 199 - -
Vivi3g01171 343 SUPERFAMILY t-snare proteins 66 306 IPR010989 GO:0016020|GO:0016192
Vivi3g01171 343 MobiDBLite consensus disorder prediction 204 220 - -
Vivi3g01171 343 CDD SNARE_syntaxin5 254 327 - -
Vivi3g01171 343 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 251 313 IPR000727 -
Vivi3g01171 343 PANTHER SYNTAXIN 64 331 IPR045242 -
Vivi3g01171 343 MobiDBLite consensus disorder prediction 1 60 - -
Vivi3g01171 343 MobiDBLite consensus disorder prediction 183 199 - -
Vivi3g01171 343 Pfam SNARE domain 287 339 IPR000727 -
Vivi3g01171 343 MobiDBLite consensus disorder prediction 24 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01171 Vivi-Chr3 19599538 19604342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01171 1 343 SNARE and Associated Proteins AT3G24350 61.867 5.57e-145 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01171 K08490 - mnt:21390779 459.529