Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01159 ATGGCGATCAAACCTACCAAAGCCGAGAAGAAGCAGAATTACGATGCTAAGCTCTGCCAACTCATCGACGAATTCACCCAAATCCTTGTTGTTAACGCCGACAATGTCGGATCCAACCAGCTCCAGAACATTCGTAGCGGTCTCCGTGGTGACTCCGTGGTTCTCATGGGGAAGAACACCATGATGAAACGTTCCGTTCGTATCCATGCTGAGAAAACCGGAAACAACGCATTTCTCAACCTCATTCCCCTTCTTGTCGGAAATGTTGGTTTGATTTTCACAAAAGGTGACTTGAAGGAAGTTAGCGAAGAGGTTGCGAAGTACAAGGTTGGAGCTCCCGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTCGTTGTGCCTCCAGGCAACACAGGGCTCGACCCCTCTCAGACTTCTTTCTTCCAGGTGCTTAACATTCCAACCAAGATTAACAAGGGTACTGTGGAAATCATTACCCCTGTGGAACTCATTAAGAAGGGAGACAAGGTTGGATCTTCCGAAGCTGCCTTGCTTTCCAAGTTAGGCATAAGGCCCTTTTCCTATGGTCTTGTGGTTCTTCATGTTTATGATAACGGTTCAGTTTTTAGCCCCGAGGTTCTTGACCTCACCGATGATGACCTTGTTGCGAAGTTTGCTGTTGGGGTCTCAATGGTTACTTCACTCTCTTTGGCTATCTCGTACCCAACACTTGCAGCTGCTCCTCATATGTTTCTCAATGCCTACAAGAACGTTCTAGCTGTTGCAGTTGCTACAGAATATTCTTTCCCCGAGGCAGACGAGGTTAAAGAGTACCTAAAGGACCCAAGTAAGTTCGCTGTAGCTGCAGTTGCTGCACCAGCTGCTGCTTCCGGTGCTGCCCCTGCTGCCTCCAAGGAGGAGGCAAAGAAGGAAGAGCCGGAAGAAGAATCCGATGAAGAACTAGGTTTCGGTCTGTTTGATGAATAA 966 0.4803 MAIKPTKAEKKQNYDAKLCQLIDEFTQILVVNADNVGSNQLQNIRSGLRGDSVVLMGKNTMMKRSVRIHAEKTGNNAFLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSKLGIRPFSYGLVVLHVYDNGSVFSPEVLDLTDDDLVAKFAVGVSMVTSLSLAISYPTLAAAPHMFLNAYKNVLAVAVATEYSFPEADEVKEYLKDPSKFAVAAVAAPAAASGAAPAASKEEAKKEEPEEESDEELGFGLFDE 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01159 321 CDD Ribosomal_P0_L10e 9 185 - -
Vivi3g01159 321 Pfam Ribosomal protein L10 7 108 IPR001790 -
Vivi3g01159 321 Pfam 60s Acidic ribosomal protein 234 319 - -
Vivi3g01159 321 MobiDBLite consensus disorder prediction 305 321 - -
Vivi3g01159 321 MobiDBLite consensus disorder prediction 289 321 - -
Vivi3g01159 321 Gene3D - 6 209 IPR043141 -
Vivi3g01159 321 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
Vivi3g01159 321 SUPERFAMILY Ribosomal protein L10-like 8 134 IPR043141 -
Vivi3g01159 321 PIRSF L10E 1 320 IPR030670 GO:0042254
Vivi3g01159 321 Gene3D - 114 185 IPR043164 -
Vivi3g01159 321 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 4 304 - -
Vivi3g01159 321 FunFam 60S acidic ribosomal protein P0 113 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01159 Vivi-Chr3 19320954 19322902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01159 1 319 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 82.759 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01159 K02941 - qsa:O6P43_008964 515.768