Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01154 ATGGGAGGTATCAGTCTTGAAGAGATCATCAAGAACGAGAACGCTGATCTGGAACGGATTCCGGTGGAGGAAGTGTTTGAGCAGCTGAAATGTTCGAAAGAAGGTTTATCGTCCGACGAAGGAGCGAATCGGCTTCAAGTTTTTGGTCCGAACAAATTGGAAGAGAAAAAGGAGAGCAAGTTTTGGAAGTTTTTAGGGTTTATGTGGAATCCTTTGTCATGGGTTATGGAAGCTGCTGCTATTATGGCGATTGCTTTGGCTAATGGAAGTGGAAGACCTCCGGATTGGCAGGATTTTGTTGGTATTATTTCTCTGTTGGTTATTAACTCAACTATCAGTTTCATTGAAGAGAATAATGCTGGAAATGCTGCTGCTGCTCTCATGGCTGGTTTAGCCCCCAAAACAAGGGTTCTCAGAGATGGTCGCTGGTCTGAAGAAGATGCTGCAATTTTAGTCCCTGGTGACATAATCAGTATTAAATTGGGAGATATCATTCCTGCGGATGCTCGTCTTCTTGAGGGGGATGCTTTGAGTGTTGATCAGTCTGCCTTAACTGGAGAATCTCTTCCGGCAACGAAGAATCCCTCGAATGAAGTCTTTTCTGGATCAACTGTTAAGAAAGGTGAGATTGAAGGGTGGACTCCGTTCTTTGGGTGTTGCTAG 663 0.4434 MGGISLEEIIKNENADLERIPVEEVFEQLKCSKEGLSSDEGANRLQVFGPNKLEEKKESKFWKFLGFMWNPLSWVMEAAAIMAIALANGSGRPPDWQDFVGIISLLVINSTISFIEENNAGNAAAALMAGLAPKTRVLRDGRWSEEDAAILVPGDIISIKLGDIIPADARLLEGDALSVDQSALTGESLPATKNPSNEVFSGSTVKKGEIEGWTPFFGCC 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01154 220 FunFam Plasma membrane ATPase 133 214 - -
Vivi3g01154 220 SMART Cation_ATPase_N_a_2 16 88 IPR004014 -
Vivi3g01154 220 Pfam Cation transporter/ATPase, N-terminus 20 82 IPR004014 -
Vivi3g01154 220 Gene3D - 133 212 - -
Vivi3g01154 220 Pfam E1-E2 ATPase 132 211 - -
Vivi3g01154 220 NCBIfam HAD-IC family P-type ATPase 102 211 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi3g01154 220 SUPERFAMILY Calcium ATPase, transduction domain A 133 214 IPR008250 -
Vivi3g01154 220 Gene3D - 95 132 - -
Vivi3g01154 220 PANTHER CALCIUM-TRANSPORTING ATPASE 18 212 - -
Vivi3g01154 220 SUPERFAMILY Calcium ATPase, transmembrane domain M 16 133 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01154 Vivi-Chr3 19256508 19258365 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01154 10 218 Primary Pumps ATPases AT2G07560 80.000 2.05e-104 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01154 K01535 - vvo:131655054 422.55