Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01133 ATGGATGGTAAAAGGGCCAATGATGGGGTGATAGTCCCCAGAAAGGGGATAGGCAGCAGTATGTTAAAAGATACTGTAAACACTCGAAATGGTCAAGTATGTAGCCGCCTTGGTTGCAGCAGCAAAGTCGGCTCTTCTAAAAGTTCTCAAATTGGTTCGTCTGAAAAGGGTAAATCTTTGAGGCCTTCATTTCGGTTCTCATCAAATGGTAAGGAAACAATTGGTAGCTCCTCTAGAACTTCCTCGGGAAGTAGTAACCCAGGAAAACCCAATAGAAAGCCTCAGAAAACATTAGCATCTCATATAGAGATAGATTCATCTGAAACTAGTAGCGTACAAGATGAACCAGAAGTTTCAAAGCCCTCACCCCCACCTGAAAAAAGTAAGAGGGGTCTTCAAGCTGAGGATGAAACACGGGTTCAAGAAGTAGGGAGTTCTAGTGTAGCATCTAATACAAGATCTAGGAGGAATTTTCATCCAAAACCTGGATTACGTAGTCAAGAAGTTCAAAGCACGGGTCCTGGGACACGTGCTGGTACCAGTAGGCATGGGTTAAGAAACCTCAAATGCAACTCTGTCTCCGATGTTGTCCCTGCCGGTTCTGCACCATCAGATTCAAATCTTAACAGAAGAAATGACTCCATAAAAAAGAGAAATTGTGAAGGGGAAAGTAGTTCTACAGCTAGAGGGAAAAAAATTAATGGGCCCTCAGGTGAAGGACGGAATTCTGTTTCCCGAAATGGCATATCTATCTCTGATTCAAGAATATCTAGAAATGCCCCTCACAGGGATAGGCCAGACAATAACACAGTGTCTGTTAGGACACGGAGATCAATTGGCGGTCATGCTAGGGGAAGGCTTTCTGGTCAAGGAAATGCTAATCCTGTGGTACCTAATCAGCAGTCCCTTATCATGGTACCTTCATTCTCTCATTCTGGCAATCGAAATGCTCTTGGTGTACAAGATCGTAGTTCTCTGGAGACTCCTTCAAGTCCAAGCTCTTACAGTGGAGCAGGTACTAGCAGCGACGAGTTATACGGTGTTATAACTCCTACAGAATATGGCCTCACTCGTCCTCTCATGAATCGGGATAGTTTTCGACGACGCTACAACATGGATGGTATTGCAGAGGTATTGTTGGCACTTGAGAGGATTGAACAAGATGTCGAGCTGACACACGAGCAAATTCTTTTACTGGAGTCCAACTTGTTCCTTACTGGATTAAACTTCTACGATCAGCATAGAGACATGCGACTGGATATTGATAACATGTCATACGAGGAACTACTGGCTCTTGAAGACAGGATGGGTACTGTGAGCACAGCTGTAACAGAGGAAGCTCTGTCGGAATGTCTAAAGAGAAGTTCATATCAATACTCTGACAGTGCATCTAAGGAAGATATCAAATGCAGCATCTGCCAGGAGGAATATGCATCGGAGGAAGAAGTTGGGAGTCTGAAATGCGAGCACAAGTATCACATGGCTTGCATACAGCAATGGCTGCGGCTAAAGAACTGGTGCCCTATTTGCAAAGCATCAGTGGCATCGTCAAGTTCACCGCCGTCCCACTAG 1572 0.4466 MDGKRANDGVIVPRKGIGSSMLKDTVNTRNGQVCSRLGCSSKVGSSKSSQIGSSEKGKSLRPSFRFSSNGKETIGSSSRTSSGSSNPGKPNRKPQKTLASHIEIDSSETSSVQDEPEVSKPSPPPEKSKRGLQAEDETRVQEVGSSSVASNTRSRRNFHPKPGLRSQEVQSTGPGTRAGTSRHGLRNLKCNSVSDVVPAGSAPSDSNLNRRNDSIKKRNCEGESSSTARGKKINGPSGEGRNSVSRNGISISDSRISRNAPHRDRPDNNTVSVRTRRSIGGHARGRLSGQGNANPVVPNQQSLIMVPSFSHSGNRNALGVQDRSSLETPSSPSSYSGAGTSSDELYGVITPTEYGLTRPLMNRDSFRRRYNMDGIAEVLLALERIEQDVELTHEQILLLESNLFLTGLNFYDQHRDMRLDIDNMSYEELLALEDRMGTVSTAVTEEALSECLKRSSYQYSDSASKEDIKCSICQEEYASEEEVGSLKCEHKYHMACIQQWLRLKNWCPICKASVASSSSPPSH 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01133 523 MobiDBLite consensus disorder prediction 314 344 - -
Vivi3g01133 523 SUPERFAMILY RING/U-box 460 516 - -
Vivi3g01133 523 MobiDBLite consensus disorder prediction 21 93 - -
Vivi3g01133 523 MobiDBLite consensus disorder prediction 1 297 - -
Vivi3g01133 523 Coils Coil 382 402 - -
Vivi3g01133 523 Pfam Ring finger domain 469 511 IPR001841 -
Vivi3g01133 523 MobiDBLite consensus disorder prediction 257 271 - -
Vivi3g01133 523 ProSiteProfiles Zinc finger RING-type profile. 470 511 IPR001841 -
Vivi3g01133 523 MobiDBLite consensus disorder prediction 210 225 - -
Vivi3g01133 523 SMART ring_2 470 510 IPR001841 -
Vivi3g01133 523 MobiDBLite consensus disorder prediction 164 178 - -
Vivi3g01133 523 MobiDBLite consensus disorder prediction 139 157 - -
Vivi3g01133 523 MobiDBLite consensus disorder prediction 226 256 - -
Vivi3g01133 523 MobiDBLite consensus disorder prediction 100 117 - -
Vivi3g01133 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 433 517 IPR013083 -
Vivi3g01133 523 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 70 515 IPR045191 GO:0061630
Vivi3g01133 523 MobiDBLite consensus disorder prediction 120 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01133 Vivi-Chr3 18974949 18978616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01133 375 511 C3H Transcription Factor Family AT2G15530 43.972 2.68e-33 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01133 - - gmx:100819874 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01133 3 18974949 18978616 Vivi3g01133 3 18974949 18978616 ECH
Vivi3g01133 3 18974949 18978616 Vivi3g01133 3 18974949 18978616 PCT