Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01102 ATGAAAATACCTAGCCCTACGCGGAAGCAATCTGTTGGGGATCGTCACATGATCTCACCCACTCGCCACAATATGTCCCGATCAGCGCGGAGGAGGAAAAACACTGGTCATTGGTGGTTGTCATCCATATCATGGAGGATGAAGAAGAATGAGGACTCATATGACTTGACTCCTCAAACTCACTTCTCTTCCAATAGTCCCTACTACAAGGGTCTCACTGATCAATCTCTTGCTATCACTCCAACCTCTCATGAACAAGACTATGAACACGACAACAACACTGCCCCGCCATCACTCCGGCCTCTCCTCCTTTCATCATCCCCCATCAGTAGTCCTTACTACAAAGGTCTTACGGATTATTCTCTTGTCGTCGATGCTTCTTGGACTGCTACTTCTCATCCAATTCCTCATCACAGTTCTTCTCTTTCTTGTCACCATGACTCAAGTCCATACTATAGGGGCCTTATTGCTCTTCCTGTTCCTGCCTCCCCCACTTCTCTCTACTCCCTCAACATCAATTTCAATACCTCCACAACCACGTCCGCCCAACCATCAACTCATGATTTTGTTGTCTTTTTAAGTCCAGAAGATCAATCACTGATGGTGACAGAGCCGGAAACAACTTTAAAGGAGGCAATGGTGTTGATCCATCCAGGTATCCAGGGGAAGCCTTTGAGGGTTAATGATCAGTCGTCATCACAAGCAACTTTGGAGGAGATGGATGATGATGGTGACGTCGATGATGATGACGACAACGGCGATAATATTGAAGGTGAGAAGCCTTTGAGGGTTAATAATGAATCGGAAACAATTCTAGAGAAAACAATTTTGGAAGATGCCGTGTTGTTGGTTGAAGAGCATACTAGGAAGCCTTTGAGGGAGGGAGTAACATCAGATTCTGAGACAGTATTGTTACAGCAAGAAAGTGCTAACAAATCAGATTTAGGTTTGGAGGAGATGGAATTGGTGATTGATCAAGAGAAGCCATTGAGAGAGAGTGAGAAAGCACTAATAAACACAGAGAAAACAAATTTGAAAGAGGAACTCGGAGACTTTTGGTTGGGTGGTCAAAAGACTGTTTCTGAACAAACAGTGGCATTGGAATTACCTTGTGAGCACATGTTGAAGCACACAGCTGAGGAAGGAAATCTATATGAGTATCTGTGGGCAACCAAATACCAGCCTAAGAAATTGGGAGACTTCATCTGCAACAAAACTAGAGCACTTGAGCTGAAAGCATTGGTAAAAGGGGGATGTGGCTGTAATCACTTTATATTCGAAGGACCCCCAAATGTAGGAAAGAGATCCATGATACGGGCTATGCTTCGAGAGGTATTTGGCGATGATGGAGTGCAGGTCACAGAAGAATTTAAAGACTTCAGCTTGAAGGGAGAAATGGTCGAAAATCTCCAACTGCGCGTGCAGAAATCACTCCATCATGTTGAGGTAAATCTATCAGAAGCAAAGGGATATGAAAAACATGTGATTGTTGAGCTATTCAAGGAAACATATGGTAAGGTGATAAATAGCTCATTGCCTTGTAGTCCCGAAAACTGTCAAGCAATCATTTTGTACGAGGCGGAGAAGCTATCATTAGAATCGGTGTTGTATATAAAGTGGATGGTAGAAAAGTATAAAGGGTGCAATAAGCTGTTCTTTTGTTGCTCTGATGAATCAAGGCTACAACCAATCCAATCACATTGCACCACTGTCCGTCTCTCATCACCATCAACCCAACAGATTGTCAAGATTTTGGAATATATTGTACAAGAAGAAGGAATAAAGTTATCACGCGAGTCAATCAAGAAGATAATTTTGAGGTCCAAAAACAATCTCCGTCAAGCCATTCGTTCATTGGAAGCCACTTACAGACACAAGAATGTCCTCAATGACGATGATTTAATTTTAACTGGATGGGAGTACGATATATTGAATATTGCTAAAAATATAATCAGAGAGCAGAGTCCAAGACAGTTGTACGCCATTCGACGAAAGCTTCAAAGTCTTATGATTCACGATGTTCCTCCTGACTTTATTTACAAGTCTTTGGTTGCAGACTTAACAAGCCTAGTTGATGATTCACTATGCTCAGAGGTTGCCAAACTTGACAAGGAGTACATCAAAGGTAGTGAAATGAAATTTGAAAACAAACAAGGAGGATCGGATGAAAAGAACAGTGAGCTAACGAAAAAGAATGCAATGAACTATTTAAAAGTTGAAGAATTCATAGCAAAATTCATGAGCTGGTACAAGAATTCGTCTAAAAGTAATGATCATATGCAACTTGTTGCTGGAGTTTAA 2301 0.4163 MKIPSPTRKQSVGDRHMISPTRHNMSRSARRRKNTGHWWLSSISWRMKKNEDSYDLTPQTHFSSNSPYYKGLTDQSLAITPTSHEQDYEHDNNTAPPSLRPLLLSSSPISSPYYKGLTDYSLVVDASWTATSHPIPHHSSSLSCHHDSSPYYRGLIALPVPASPTSLYSLNINFNTSTTTSAQPSTHDFVVFLSPEDQSLMVTEPETTLKEAMVLIHPGIQGKPLRVNDQSSSQATLEEMDDDGDVDDDDDNGDNIEGEKPLRVNNESETILEKTILEDAVLLVEEHTRKPLREGVTSDSETVLLQQESANKSDLGLEEMELVIDQEKPLRESEKALINTEKTNLKEELGDFWLGGQKTVSEQTVALELPCEHMLKHTAEEGNLYEYLWATKYQPKKLGDFICNKTRALELKALVKGGCGCNHFIFEGPPNVGKRSMIRAMLREVFGDDGVQVTEEFKDFSLKGEMVENLQLRVQKSLHHVEVNLSEAKGYEKHVIVELFKETYGKVINSSLPCSPENCQAIILYEAEKLSLESVLYIKWMVEKYKGCNKLFFCCSDESRLQPIQSHCTTVRLSSPSTQQIVKILEYIVQEEGIKLSRESIKKIILRSKNNLRQAIRSLEATYRHKNVLNDDDLILTGWEYDILNIAKNIIREQSPRQLYAIRRKLQSLMIHDVPPDFIYKSLVADLTSLVDDSLCSEVAKLDKEYIKGSEMKFENKQGGSDEKNSELTKKNAMNYLKVEEFIAKFMSWYKNSSKSNDHMQLVAGV 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01102 766 Gene3D - 638 750 - -
Vivi3g01102 766 CDD HLD_clamp_RFC 576 634 - -
Vivi3g01102 766 MobiDBLite consensus disorder prediction 1 31 - -
Vivi3g01102 766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 389 627 IPR027417 -
Vivi3g01102 766 MobiDBLite consensus disorder prediction 236 255 - -
Vivi3g01102 766 SUPERFAMILY post-AAA+ oligomerization domain-like 638 704 IPR008921 GO:0003677|GO:0006260
Vivi3g01102 766 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 389 697 - -
Vivi3g01102 766 Gene3D - 577 636 - -
Vivi3g01102 766 MobiDBLite consensus disorder prediction 222 260 - -
Vivi3g01102 766 Gene3D - 387 576 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01102 Vivi-Chr3 18436494 18441699 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01102 388 752 Core DNA Replication Machinery Family AT5G27740 30.811 1.72e-47 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01102 K10756 - gmx:102664389 650.588