Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01099 ATGGAAGCAGTTTATGGAAAATCGCTGCTATTTGGTACCGGAGTCAATCTCAGAGTCGGAGTTGGACTCAGAACCAAACCCTCACACTCTGTCTTCTTCCTTTCAAACTCCACTTCCGATAGCAGCACCACCCATTCCAAACCACAATCGCGTTTCGATAAACTAAATGCTAACAAACACAAAGCCAACGCTCTTATCCTTAGATCAAAGGAAAAGATTAGAAGACGCAAACAAGCTGAACTAGATGAAAATCCCGCAACTGCATCACCAACACGACGTCGTTTAAGTACTCATCCCAAAGGTTGGGGAGATACTAGGGTTACGTCGTTTAAATCCTCATTGCCGTTGGAGGATACCAACTTTTTCAGTCTCAAATCCTTTAAAGACATTGGTTGCGCTGATTTCGTTATTCAATCTCTCCATAAACTCTCTTTAACTCGTCCTTCACATATTCAAGCCATATCGTTTGCTCCGATTATTGCTGGAAAATCTTGTATCATAGCTGATCAGAGTGGTTCTGGTAAGACATTGGCTTATCTTGTACCGATTATTCAGCGTCTCAGACAACAAGAACTAGATGGACGTCATAAATCATCTTCACATGCTCCAACAGTTCTTATACTCGCGCCTACGGCCGAGTTGGCTTCTCAGGTCTTACTTAATTGTCGATCAATGTCAAAATCAGGAGTTCCGTTCAAATCTATGGTTGTCACTGGTGGCTTTGCACAAAAAACTCAACTGGAAAGTTTAAAGCAGGGCGTTGATGTATTAGTTGCTACACCGGGTCGTTTTTTGTTCCTCATGAAGGAAGGCTTCTTGCAGTTAACAAATCTAACATGTGCTGTGTTGGATGAGGTAGATATACTCTTTGGGGATGAGGACTTTGAAAAGGCTCTTCAATGCTTGATTAGTTCTTCACCAGTTGACTCACAGTATTTATTTGTGACTGCAACTTTACCAAAAAATGTTTACAGCAAACTGGTTGAAGTTTTTCCTGATTGTGAAATGGTCATGGGACCTAGTATGCATAGAATAAGCTCTCGCCTCGAAGAGATAATAGTAGATTGCAGTGGGGAAGGTGTACAAGAAAAGACACTGGACACGGCATTTTTGAACAAGAAAGCTGCTCTTCTGAAGCTTGCGGAGGAGAACCGTGTCCCAAGAACTATTGTGTTCTGTAACAAAATTGAAACATGCAGAAAAGTTGAAAATGCGTTAAACCGTTTTGATAGAAAGGGAATTCGCATGCAAGTTCTACCTTTCCATGCTGCCATGACACAAGAATCGCGGCTTGCTAGTATGAAAGAGTTTGCCCGCTCTCCGTCAAAAGAAGTGTCCCAATTTATGGTTTGCACAGACAGAGCATCGCGGGGAATCGACTTCACTGGAGTAGATCATGTAATACTTTTCGACTACCCCCGTGATCCAAGCGAATATGTACGGCGTGTTGGAAGAACAGCACGAGGTGCCAGGGGACAGGGCAAGGCATTTATCTTTGTAGTTGGCAAGCAAGTATCCCTTGCACGCAAAATATCGGAAAGAAATCGGAAGGGTCATCCACTGCATGATGTACCTTCGGCTTATGAGAGTTGA 1593 0.4294 MEAVYGKSLLFGTGVNLRVGVGLRTKPSHSVFFLSNSTSDSSTTHSKPQSRFDKLNANKHKANALILRSKEKIRRRKQAELDENPATASPTRRRLSTHPKGWGDTRVTSFKSSLPLEDTNFFSLKSFKDIGCADFVIQSLHKLSLTRPSHIQAISFAPIIAGKSCIIADQSGSGKTLAYLVPIIQRLRQQELDGRHKSSSHAPTVLILAPTAELASQVLLNCRSMSKSGVPFKSMVVTGGFAQKTQLESLKQGVDVLVATPGRFLFLMKEGFLQLTNLTCAVLDEVDILFGDEDFEKALQCLISSSPVDSQYLFVTATLPKNVYSKLVEVFPDCEMVMGPSMHRISSRLEEIIVDCSGEGVQEKTLDTAFLNKKAALLKLAEENRVPRTIVFCNKIETCRKVENALNRFDRKGIRMQVLPFHAAMTQESRLASMKEFARSPSKEVSQFMVCTDRASRGIDFTGVDHVILFDYPRDPSEYVRRVGRTARGARGQGKAFIFVVGKQVSLARKISERNRKGHPLHDVPSAYES 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01099 530 Pfam DEAD/DEAH box helicase 150 323 IPR011545 GO:0003676|GO:0005524
Vivi3g01099 530 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 372 530 IPR001650 -
Vivi3g01099 530 MobiDBLite consensus disorder prediction 511 530 - -
Vivi3g01099 530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 501 IPR027417 -
Vivi3g01099 530 CDD SF2_C_DEAD 373 500 - -
Vivi3g01099 530 MobiDBLite consensus disorder prediction 76 101 - -
Vivi3g01099 530 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 125 153 IPR014014 GO:0003724
Vivi3g01099 530 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 337 IPR014001 -
Vivi3g01099 530 Gene3D - 344 522 IPR027417 -
Vivi3g01099 530 CDD DEADc 136 323 - -
Vivi3g01099 530 Gene3D - 108 337 IPR027417 -
Vivi3g01099 530 SMART ultradead3 144 352 IPR014001 -
Vivi3g01099 530 Pfam Helicase conserved C-terminal domain 373 489 IPR001650 -
Vivi3g01099 530 SMART helicmild6 400 490 IPR001650 -
Vivi3g01099 530 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 42 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01099 Vivi-Chr3 18424631 18427862 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01099 86 513 Eukaryotic Initiation Factors Gene Family AT3G19760 25.935 2.74e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01099 K13179 - gmx:100780849 680.248