Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01088 ATGTCGAAGGAAGTGAGTGAAGAAGGTCACCAACCTCATCACCACAGTGGGAAAGACTATGTTGACCCACCACCAGCACCTCTTCTTGACTTCGCTGAAATCAAGCTCTGGTCCTTCTACAGAGCTCTCATCGCTGAGTTCATAGCAACTCTCCTCTTCCTCTATGTCACTGTCGCCACCGTCATTGGCCACAAGAAACAAACCGGACCATGCGACGGTGTTGGCCTTCTCGGCATAGCGTGGTCCTTCGGTGGCATGATATTCGTCCTCGTCTACTGCACCGCCGGTATCTCCGGTGGCCACATCAATCCTGCAGTCACATTTGGCCTCTTCTTAGCTCGTAAGGTTTCTCTTATAAGAGCTGTTTTATACATTATATCACAGTGTTTAGGTGCCATTTGCGGTGTTGGGTTGGTGAAGGCTTTCATGAAGCATCCTTACAACAGCCTCGGTGGTGGTGCTAACTCTGTTGCTTCTGGTTATACCAAAGGCTCTGCACTTGGTGCTGAGATTATCGGAACTTTTGTGCTTGTTTACACCGTTTTCTCTGCTACTGACCCTAAGAGAAGTGCTAGGGACTCTCATATTCCTGTTTTGGCTCCTTTGCCTATTGGTTTTGCTGTTTTCATGGTTCATCTTGCCACTATACCTATCACCGGTACCGGAATTAACCCGGCCAGAAGCTTCGGCGCTGCTGTTATCTTCAACAATGGCAAAGTTTGGGATGACCAATGGATTTTCTGGGTTGGACCGTTCGTGGGAGCGGCGGCTGCGGCGGCGTACCATCAGTATATTCTGAGAGCGGCGGCTATCAAGGCGTTGGGCTCGTTCAGAAGCAACCCCACCAACTAA 852 0.4988 MSKEVSEEGHQPHHHSGKDYVDPPPAPLLDFAEIKLWSFYRALIAEFIATLLFLYVTVATVIGHKKQTGPCDGVGLLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYIISQCLGAICGVGLVKAFMKHPYNSLGGGANSVASGYTKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNNGKVWDDQWIFWVGPFVGAAAAAAYHQYILRAAAIKALGSFRSNPTN 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01088 283 MobiDBLite consensus disorder prediction 1 21 - -
Vivi3g01088 283 PRINTS Major intrinsic protein family signature 169 187 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi3g01088 283 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi3g01088 283 PRINTS Major intrinsic protein family signature 83 107 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi3g01088 283 PRINTS Major intrinsic protein family signature 205 227 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi3g01088 283 PRINTS Major intrinsic protein family signature 120 139 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi3g01088 283 PRINTS Major intrinsic protein family signature 245 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi3g01088 283 CDD MIP 41 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi3g01088 283 MobiDBLite consensus disorder prediction 1 20 - -
Vivi3g01088 283 SUPERFAMILY Aquaporin-like 33 267 IPR023271 -
Vivi3g01088 283 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 272 IPR034294 -
Vivi3g01088 283 FunFam Probable aquaporin PIP1-2 26 281 - -
Vivi3g01088 283 ProSitePatterns MIP family signature. 101 109 IPR022357 -
Vivi3g01088 283 NCBIfam MIP family channel protein 45 261 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi3g01088 283 Pfam Major intrinsic protein 34 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi3g01088 283 Gene3D Glycerol uptake facilitator protein. 26 283 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01088 Vivi-Chr3 18289831 18294215 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01088 1 283 Major Intrinsic Protein MIP AT4G35100 89.399 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01088 K09872 - egr:104418957 520.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01088 3 18289831 18294215 Vivi3g01088 3 18289831 18294215 ECH