Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01080 ATGAAAACGATTATGATAGGTGGCGTTACAGAAGATCCTCGAGCTAGTCTTCTAAGCGCGGTCGTCCAATCTGCATTTGAAGACAAGCTGCAGAATCAGAAATCAAGAATCCAACAAGATAACAAAAGATTGGAGGAAGAGATGAATGTGTCATCAAGATCATCATCATCATCTTCATTGCAGAAGCTTGGATGGCCACTTCTCCGTAGTCGGTTGCATACAGAAACCTCAAGAGACATGTCTGTCGTGCAATGGGTAATGAACTTACCAGACAGGTCTTCATCTCAAATTGAGGACAAGAGCTGTAAGAAAGTTAACAGTTTCAGTAGCTGCAAAAGGTTCAGCTTCGAGATTCTCAATTCTTGCACGTGTCAATTCTCCGAAGAAAATGTGATTGGAATCGGAGGTAGCAATCGCGTGTATAGAGGAACCCTCCCTAATGGAAAACAAGTAGCTGTCAAAGTTATGCAGTCATCAAAAGAAGCCTTCAAAGATTTTGTTCTTGAAGTCGAAATAATGTCCTCATTGAACCATGCAGCCATTGCTCCTTTACTCGGAATTTGCATTGAAAATGGATCTTTGATATCTGTTTACGATTATTTCCCCCAAGGAACGTTATACCAAAATCTACGCGGTAAGAACGAGGATGAATCTATATTGCCATGGGAGATAAGATTTAAGGTAGCTGTTGGGATCGCGGAAGCATTGAACTATCTGCATAACCAAATCTCAAGGCCTGTTATACATAGAGATGTCAAGTCTTCCAACATTCTTCTTTCCCGCGGATTCGAGCCAAAATTATGTGATTTTGGACTTGCTATGTGGGGACCAACAACTTCATCGTTTACGATACAAAACGACGTAGTAGGAACCTTTGGTTATCTTGCACCTGAATATTTCATGTATGGAAAGGTGAGTGACAAGATAGATGTATATGCCTTTGGTGTTGTCCTACTTGAGCTCATATCAGGGAGAGAACCGATCCACTCGAAAGCTAGCAAAGGACGCCAGAGTTTGGTCGCGTGGGCAAAACCGATTTTAGAGAGTGGAGATGTTAAAAGGTTAATGGATACAAATTTGCAAGGAAAGTTTGATGTAGAGCAAATGAACAGAATGGTTCTTGCAGCGTCGCTATGCTTAACACGGGCTGCGCGGCTTCGTCCTACAATGAATAAGATACTAAATATATTGAAAGGATGCGACGAGAAAGATGAAAACATGTTTAAATCTCAAGAGAGTAAACACGATCATTCTGAAAATCAAGAAAACGTTGACGATGAAGTTTATCCGAAATCAAATGCAGAATTACACCTAAACCTTGCATTAATTGATGTTGAGAATGATGCTGCATCATATAGTAAGTATAAAGAGCAATAA 1377 0.4038 MKTIMIGGVTEDPRASLLSAVVQSAFEDKLQNQKSRIQQDNKRLEEEMNVSSRSSSSSSLQKLGWPLLRSRLHTETSRDMSVVQWVMNLPDRSSSQIEDKSCKKVNSFSSCKRFSFEILNSCTCQFSEENVIGIGGSNRVYRGTLPNGKQVAVKVMQSSKEAFKDFVLEVEIMSSLNHAAIAPLLGICIENGSLISVYDYFPQGTLYQNLRGKNEDESILPWEIRFKVAVGIAEALNYLHNQISRPVIHRDVKSSNILLSRGFEPKLCDFGLAMWGPTTSSFTIQNDVVGTFGYLAPEYFMYGKVSDKIDVYAFGVVLLELISGREPIHSKASKGRQSLVAWAKPILESGDVKRLMDTNLQGKFDVEQMNRMVLAASLCLTRAARLRPTMNKILNILKGCDEKDENMFKSQESKHDHSENQENVDDEVYPKSNAELHLNLALIDVENDAASYSKYKEQ 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01080 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Vivi3g01080 458 ProSiteProfiles Protein kinase domain profile. 126 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g01080 458 Gene3D Transferase(Phosphotransferase) domain 1 201 427 - -
Vivi3g01080 458 SMART serkin_6 126 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g01080 458 FunFam Putative receptor-like serine/threonine-protein kinase 201 415 - -
Vivi3g01080 458 MobiDBLite consensus disorder prediction 32 58 - -
Vivi3g01080 458 PANTHER OS08G0249100 PROTEIN 34 425 IPR046958 -
Vivi3g01080 458 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 96 200 - -
Vivi3g01080 458 Gene3D Phosphorylase Kinase; domain 1 89 200 - -
Vivi3g01080 458 SUPERFAMILY Protein kinase-like (PK-like) 106 397 IPR011009 -
Vivi3g01080 458 MobiDBLite consensus disorder prediction 33 49 - -
Vivi3g01080 458 MobiDBLite consensus disorder prediction 408 429 - -
Vivi3g01080 458 Coils Coil 27 54 - -
Vivi3g01080 458 Pfam Protein kinase domain 127 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01080 Vivi-Chr3 18115841 18117776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01080 98 397 Receptor kinase-like Gene Family AT3G58690 40.717 3.45e-73 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vivi3g01080 Pkinase 1.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01080 - - vvo:131655042 898.656