Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01079 ATGTCAACTCACGAAGACGACCTCGATCTTCTGCTTTCTCTTCAAGACAAAGTTCCCGAAACCCCTCCCGCGTCTCCTTCACCGCTTGATTTTGATGGCGATGATGAAGATGTTGTATTGCGTAGGGAGAGACCTGATATGTCCGTTTTCAAAGATGCAGTTCAGGATTGCCTTCTCAACCAACCTTCTAACCCTAATCCTAATCTTAACCCTAAGCCAAACAACAAATCAAAATCACTCGGCGACGATCCCCAACTTGACAAATTCTCTGGTCTTCGCATAAGGGACCAATGTTTAACACCAGCTGAACTTAGGGAACAAGTTCAAGACATTCGTTTTGTTCGCCTACCGGTCATCAAGAATTTGGTGAATGGGGATACTTTCTCTGGAAGTTGGGTAACTATTGGGGTGTTGACTGAGAAGGGGTTTCAGAAAACAAGTTCAAATGGGAAGAGCTTTTGTATATGGAAAATTGGGTGTTTGGATGAAAATTCTGTTCCTCTTTTCTTGTTTGGAAATGCTTATCAGAGGAATTGTCAAGAGCAGGCAGGAACGGTCTTCGCACTCTTCAATTGTGGTGTTCGCAAGGATCCCAAGGGCAATGGTTTTTCTTTGAGTATATACTCCCCTAACCAAATTGTGAAGATGGGCACCTCTGTAGATTACGGAGTTTGCAAAGCAAAAAGAGCGGATGGGATGGCATGTACAATGGCCATAAATAAGCGTCAGGGGACTTATTGTAAATATCATAAATCAAAAACATCAGAGAAATATTCCACTGTACGAACTGAACTCAAAGGAGGAAACTTAAGGTCAGCATTTAGGCCTAGAGATTATCTCAAGTCCGAAGGAATATACTTAGTTGATCCCCTCGCCGATAAAACAAACTTGAAGAAGTCTAAGCCAGTGAAATTGTTGTCCGTCGATAGTCTCAGAAGGGCATTGAGCAATGCAGGAAAAGTAACAACAACTTCACACTCCCAAGGGATTAGATTTCTTTCGGAGGTTGCAGGTAAATTTGATCCAAACATGATGAAAAAAGTTCCAAAGATTCCAAACGAACACAGCAAACAAACAGAGAAGAGGAAGTCATCTTCTGTGAATACGGGATACTCTACTGTCAATAAAAACCAACAGTCAGATGTAAAAAGGGTAAAAACAGAGGGGCAAAGTTCTGTTGATAAAGCCACAAAGAGTGCAATAAATATGATTGACTTAGACCTTGTTAGTTCGGATGAGGACTTCTGA 1248 0.4159 MSTHEDDLDLLLSLQDKVPETPPASPSPLDFDGDDEDVVLRRERPDMSVFKDAVQDCLLNQPSNPNPNLNPKPNNKSKSLGDDPQLDKFSGLRIRDQCLTPAELREQVQDIRFVRLPVIKNLVNGDTFSGSWVTIGVLTEKGFQKTSSNGKSFCIWKIGCLDENSVPLFLFGNAYQRNCQEQAGTVFALFNCGVRKDPKGNGFSLSIYSPNQIVKMGTSVDYGVCKAKRADGMACTMAINKRQGTYCKYHKSKTSEKYSTVRTELKGGNLRSAFRPRDYLKSEGIYLVDPLADKTNLKKSKPVKLLSVDSLRRALSNAGKVTTTSHSQGIRFLSEVAGKFDPNMMKKVPKIPNEHSKQTEKRKSSSVNTGYSTVNKNQQSDVKRVKTEGQSSVDKATKSAINMIDLDLVSSDEDF 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01079 415 MobiDBLite consensus disorder prediction 59 80 - -
Vivi3g01079 415 MobiDBLite consensus disorder prediction 1 36 - -
Vivi3g01079 415 FunFam DNA replication licensing factor mcm10 78 252 - -
Vivi3g01079 415 PANTHER PROTEIN MCM10 HOMOLOG 24 388 IPR040184 GO:0003690|GO:0003697|GO:0006270
Vivi3g01079 415 MobiDBLite consensus disorder prediction 363 380 - -
Vivi3g01079 415 MobiDBLite consensus disorder prediction 59 83 - -
Vivi3g01079 415 Pfam Primase zinc finger 217 260 IPR015408 GO:0005634|GO:0006260
Vivi3g01079 415 MobiDBLite consensus disorder prediction 348 362 - -
Vivi3g01079 415 MobiDBLite consensus disorder prediction 343 397 - -
Vivi3g01079 415 Gene3D - 78 251 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01079 Vivi-Chr3 18106234 18110704 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01079 17 414 Core DNA Replication Machinery Family AT2G20980 51.750 7.51e-125 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01079 K10736 - gmx:100527758 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01079 3 18106234 18110704 Vivi3g01079 3 18106234 18110704 ECH