Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01059 ATGGAAGGAGAAATTAGGGTTTGGTGTTTGGAACATCTTCTTAGAAAATCAAGCATCAAGACCAACCTCATCAACAAATTTATTTCTAAAATCTCACTCTCCAATACCGATTACCGCACCAAGAAAACAATGATCCTCAGAACCCTCGAAGATGCCTTGTCGGAAGCATTTATCCCAGAATATATGCTCCAAATTTTTGAGGTACTAGAAAAACTGTTACTTTGTCGCGACTCTTCAAATCCAAATTCAAATTCAAATTCAATCGCTGCTGCCATGAAAGCTGCTTATTGTAGTATTGCAGTTGAATCTACACTCAAGCATCTCGATGCAGGAACATCAAACCCTATGTACGGCAAAGCGGTGAAGAGGATATGGAAAGATAGGGTTCATGATATGCACAATGAGGGAAGTAGTTTTCTATTATCCGATGAATTGAAAGAATGGAAAAGTGAGATTGAGAAATCGCTTTTGGATGGAGAAGTTAGGAAGAAGCTTGCTTCCATTCCGTTTACTCGAAGAGACGCGATTGTAAAGGTGCAGGCTTTTTTGGCTGAAGCTTGGGAGGACTTAGGCCCTTCCTTTCTTGAATCAGTGGCGAACAATCAGTTGGATTCGAGTGTGGATGGCTTGCAGAAACAACAGGAAGTTTCTCCAATAGAAATTCGGAAAGACAATGAGAAGGTTGAAGGGAAGTTTACTACTGCTGTTGATCTTGAGGAAGTGGATTTATCAACCTCTTGTGTAAAAGCTGACACTTTGCGGATTAGCGAGAGCACGAAGAATGGGGAATCTCTTAAGGGAAGTTCTGTGGAGTTGCAAACCTTGGCCAAGGATTCTGGTTTGGTAATTGAGGACACGAATGAGGAGCCACAAATGGAAAACCCGAGTTTGGATGCAAACTTGCCCAACGCACAAGCTTGCCAGGGTAGTAATAATAACGAGACTAATCTTAATGAGACAACTTCTGTTCATCAAAGTGATGCTCATCTCCCTAACTTGATGAAACCAAATAGTACTGCTCGAACTCATGAGTGGGATGATTCCATAGATGGCTTACATGCTAGTAAATTTAGTTTGCCTAGTCCAAAGAGGAGGAAACATTCTCCATTGAAGGCGTATGAACCAAAAAACATCGTAAAAAGGAGAAAACCGAAAAAATGGAGTAAATTGGAAGAGGATACCCTAAGAACCGGAGTAAACACATTTGGCAAAGGAAACTGGAAACTAATCCTTAACGCGTATACGTTTGAAGAGAGAACTGAAGTTGATTTGAAGGACAAATGGAGAAACATGATGCGGTATGGAGGCGAATGA 1314 0.4102 MEGEIRVWCLEHLLRKSSIKTNLINKFISKISLSNTDYRTKKTMILRTLEDALSEAFIPEYMLQIFEVLEKLLLCRDSSNPNSNSNSIAAAMKAAYCSIAVESTLKHLDAGTSNPMYGKAVKRIWKDRVHDMHNEGSSFLLSDELKEWKSEIEKSLLDGEVRKKLASIPFTRRDAIVKVQAFLAEAWEDLGPSFLESVANNQLDSSVDGLQKQQEVSPIEIRKDNEKVEGKFTTAVDLEEVDLSTSCVKADTLRISESTKNGESLKGSSVELQTLAKDSGLVIEDTNEEPQMENPSLDANLPNAQACQGSNNNETNLNETTSVHQSDAHLPNLMKPNSTARTHEWDDSIDGLHASKFSLPSPKRRKHSPLKAYEPKNIVKRRKPKKWSKLEEDTLRTGVNTFGKGNWKLILNAYTFEERTEVDLKDKWRNMMRYGGE 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01059 437 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 386 436 IPR017930 -
Vivi3g01059 437 MobiDBLite consensus disorder prediction 310 332 - -
Vivi3g01059 437 SUPERFAMILY Homeodomain-like 381 433 IPR009057 -
Vivi3g01059 437 ProSiteProfiles Myb-like domain profile. 379 432 IPR001005 -
Vivi3g01059 437 PANTHER MYB TRANSCRIPTION FACTOR 4 434 - -
Vivi3g01059 437 SMART sant 383 434 IPR001005 -
Vivi3g01059 437 CDD SANT_TRF 385 433 - -
Vivi3g01059 437 Gene3D - 376 435 - -
Vivi3g01059 437 Pfam Myb-like DNA-binding domain 385 431 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01059 Vivi-Chr3 17759218 17761992 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01059 8 432 Single Myb Histone (SMH) Gene Family AT1G15720 28.341 7.15e-24 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi3g01059 Myb_DNA-binding 3.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01059 - K11111 psat:127081272 664.455