Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01042 ATGGAAACGATTATGATAGGTGGCGTTACAGAAGATCCTCGAGCTAGTCTTCTCAGCACGGTCGTCCAATCTACATTTGAAGACAAGCTGCAGAATCAGAAATCAAGAATCCAACAAGATAATAGAAGATTGGAGGAAGAGATGAATGTGCCATCAAGATCATCATCATCTTCATCGCAGAAGCTTGGATGGCCACTTCTCCGTAGTCGGTTGCATACAGAAACCTCCAGAGACATGTCTGTTGTGCAATGGGTAATGAACTTACCAGACAGGCCTTCATCACAAATCGAGAACAAGAGCTGTAAGAAAGTTAACAGTTTCAATAGCTGCAAAAGGTTCAGCTTCGAGATTCTCAATTCTTGCACATGTCAATTCTCCGAAGAAAATGTGATTGGAATCGGAGGTAGCAGTCGCGTGTATACAGGAACTCTCCCTAATGGAAAACAAGTAGCTGTCAAAGTTATGCAGTCATCAAAAGAAGCCTTCAAAGATTTCGTTCTTGAAGTCGAAATAATGTCCTCATTGAACCATGCAGCCATTGCTCCTTTACTCGGAATTTGCATTGAAAATGGATCTTTGATATCTGTTTACGATTATTTCCCCCAAGGAACGTTATACAAAAATCTACGCGGTAAGAACAAGGATGAATCTCTACTGCCATGGGAGATAAGATTTAAGGTAGCTGTTGGGATCGCGGAAGCATTGAACTATCTGCATAACCAAATCTCCAAGCCTGTCATACATAGAGATGTCAAGTCTTCCAACATTCTTCTTTCCCGCGGATTCGAGCCAAAATTATGTGATTTTGGACTTGCTATGTGGGGACCAACAACTTCATCGTTTACGATACAAAACGATGTAGTAGGAACCTTTGGTTATCTTGCACCTGAATATTTCATGTATGGAAAAGTGAGTGACAAGATAGATGTATATGCCTTTGGTGTTGTCCTACTTGAACTCATATCAGGAAGGGAACCGATCCACGCGAAAGCTAGCAAAGGACGCCAGAGTTTGGTCGCGTGGGCAAAACCGATATTAGAGAGTGGAGATGTTAAAAGGTTAGTGGATACAAAGTTGGAAGGAAAGTTTGATGTAGAACAATTGAACAGAATGGTTCTTGCAGCATCTCTATGCTTAACACGGGCTGCGCGGCTTCGTCCTACAATGAATAAGATACTAAATATCTTGAAAGGATGTGACGAGAACGACGAAAAATTGTTTAAATCTCGAGAGAGTGATTGCGATCATTCGGAAAATCAAGAAAACGTTGATGACGAAGTTTATCCGAAATCAAATGCAGGATTGCACCTAAAACTTGCATTACTTGATATTTGA 1335 0.4105 METIMIGGVTEDPRASLLSTVVQSTFEDKLQNQKSRIQQDNRRLEEEMNVPSRSSSSSSQKLGWPLLRSRLHTETSRDMSVVQWVMNLPDRPSSQIENKSCKKVNSFNSCKRFSFEILNSCTCQFSEENVIGIGGSSRVYTGTLPNGKQVAVKVMQSSKEAFKDFVLEVEIMSSLNHAAIAPLLGICIENGSLISVYDYFPQGTLYKNLRGKNKDESLLPWEIRFKVAVGIAEALNYLHNQISKPVIHRDVKSSNILLSRGFEPKLCDFGLAMWGPTTSSFTIQNDVVGTFGYLAPEYFMYGKVSDKIDVYAFGVVLLELISGREPIHAKASKGRQSLVAWAKPILESGDVKRLVDTKLEGKFDVEQLNRMVLAASLCLTRAARLRPTMNKILNILKGCDENDEKLFKSRESDCDHSENQENVDDEVYPKSNAGLHLKLALLDI 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01042 444 Pfam Protein kinase domain 126 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g01042 444 SUPERFAMILY Protein kinase-like (PK-like) 106 396 IPR011009 -
Vivi3g01042 444 SMART serkin_6 125 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g01042 444 ProSitePatterns Protein kinases ATP-binding region signature. 131 153 IPR017441 GO:0005524
Vivi3g01042 444 PANTHER OS08G0249100 PROTEIN 31 422 IPR046958 -
Vivi3g01042 444 Gene3D Phosphorylase Kinase; domain 1 89 199 - -
Vivi3g01042 444 FunFam Putative receptor-like serine/threonine-protein kinase 200 413 - -
Vivi3g01042 444 Gene3D Transferase(Phosphotransferase) domain 1 200 425 - -
Vivi3g01042 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 246 258 IPR008271 GO:0004672|GO:0006468
Vivi3g01042 444 Coils Coil 27 50 - -
Vivi3g01042 444 MobiDBLite consensus disorder prediction 33 49 - -
Vivi3g01042 444 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 95 199 - -
Vivi3g01042 444 ProSiteProfiles Protein kinase domain profile. 125 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g01042 444 MobiDBLite consensus disorder prediction 29 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01042 Vivi-Chr3 17299110 17301296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01042 97 396 Receptor kinase-like Gene Family AT3G58690 40.717 9.71e-73 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vivi3g01042 Pkinase 4.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01042 - - vvo:131655042 819.305