Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01041 ATGTCAACTCACGAAGACGACCTCGATCTTCTGCTTTCTCTTCAAGACAAAGTTCCCGAAACCCCTCCCGCGTCTCCTTCACCGCTTGATTTTGATGGTGATGATGAAGATGTTGTACTGCGGAGGGAGAGACCTGACATGTCCGTTTTCAAAGATGCAGTTCAGGATTGCCTTCTCAACCAACCCCCTAACCCTAATCCTAATCTTAATCCTAAACCAAACAACAAATCTAAATCACTCGGCGACGATCCCCAACTTGACAAATTCTCTGGTCTTCGCATAAGGGACCAATGTTTAACACCAGCTGAACTTAGGGAACAAGTTCAAGACATTCGTTTTGTTCGCCTACCGGTCATCAAGAATTTGGTGAATGGGGATACTTTCTCTGGAAGTTGGGTAACTATTGGGGTGTTGACTGAGAAGGGGTTTCAGAAAACAAGTTCAAATGGGAAGAGCTTTTGTATATGGAAAATTGGGTGTTTGGATGAAAATTCTGTTCCTCTTTTCTTGTTTGGAAATGCTTATCAGAGGAATTGTCAAGAGCAGGCAGGAACGGTCTTCGCACTCTTCAATTGTGGTGTTCGCAAGGATCCCAAGGGCAATGGTTTTTCTTTGAGTATATACTCCCCTAATCAAATTGTGAAGATGGGCACCTCTGTAGATTACGGAGTTTGCAAAGCAAAAAGAGTGGATGGGATCGCATGTACAATGGCCATAAATAAGCGTCAGGGGACTTATTGTAAATATCATAAATCAAAAACATCAGAGAAATATTCCACCGTAAGAACTGAACTCAAAGGAGGAAACTTAAGGTCAGCATTTAGGCCTAGAGATTATCTCAAGTCAGAAGGAATATACTTAGTTGATCCCCTCGCCGACAAAACAAACTCGAAGAAGTCTAAGCCAGTGAAATTGTTATCCGTCGATAGTCTCAGAAGGGCATTGAGCAATGCAGGAAAAGTAACAACAACTTCACACTCGCAAGGGATTAGATTTCTTTCGGAGGTTGCAGGTAAATTTGATCCAAACATGATTAAAAAAGGACCAAAGATTCCAAACGAACACGACAAACACACAGAGAAGAGAAAGTCATCTTCTGTGAATACGGGATACTCTACTGTCAATAAAAACCAACAGTCAGATGTAAAAAGGGTGAAAACAGAGGGGCAAAGTTCTGTTGATAAAGCCACAAAGAGTGCAATAAATATGATTGACTTAGACCTTGTTAGTTCGGATGAGGACTTCTGA 1248 0.4167 MSTHEDDLDLLLSLQDKVPETPPASPSPLDFDGDDEDVVLRRERPDMSVFKDAVQDCLLNQPPNPNPNLNPKPNNKSKSLGDDPQLDKFSGLRIRDQCLTPAELREQVQDIRFVRLPVIKNLVNGDTFSGSWVTIGVLTEKGFQKTSSNGKSFCIWKIGCLDENSVPLFLFGNAYQRNCQEQAGTVFALFNCGVRKDPKGNGFSLSIYSPNQIVKMGTSVDYGVCKAKRVDGIACTMAINKRQGTYCKYHKSKTSEKYSTVRTELKGGNLRSAFRPRDYLKSEGIYLVDPLADKTNSKKSKPVKLLSVDSLRRALSNAGKVTTTSHSQGIRFLSEVAGKFDPNMIKKGPKIPNEHDKHTEKRKSSSVNTGYSTVNKNQQSDVKRVKTEGQSSVDKATKSAINMIDLDLVSSDEDF 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01041 415 PANTHER PROTEIN MCM10 HOMOLOG 24 369 IPR040184 GO:0003690|GO:0003697|GO:0006270
Vivi3g01041 415 Pfam Primase zinc finger 217 260 IPR015408 GO:0005634|GO:0006260
Vivi3g01041 415 MobiDBLite consensus disorder prediction 365 380 - -
Vivi3g01041 415 Gene3D - 78 251 IPR012340 -
Vivi3g01041 415 MobiDBLite consensus disorder prediction 59 83 - -
Vivi3g01041 415 MobiDBLite consensus disorder prediction 16 35 - -
Vivi3g01041 415 MobiDBLite consensus disorder prediction 348 364 - -
Vivi3g01041 415 MobiDBLite consensus disorder prediction 341 397 - -
Vivi3g01041 415 FunFam DNA replication licensing factor mcm10 78 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01041 Vivi-Chr3 17290462 17295178 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01041 17 414 Core DNA Replication Machinery Family AT2G20980 51.750 6.52e-125 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01041 K10736 - gmx:100527758 541.191