Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01018 ATGGATGGAGAAATTAGGGTTTGGTGTTTGGAACATCTTCTTAGAAAATCAAGCATCAAAACCAACCTCATCAACAAACTTATTTCTAAAATCTCACTCTCCAATACCGATTACCGCACCAAGAAAACAATCATCCTCAGAACCCTCGAAGATGCCTTGTCGGAAGCATTTATCCCAGAATATATGCTCCAGATTTTTGAGGTACTAGAAAAACTGTTACTTTGTCACGACTCTTCAAATCCAAATTCAAATTCAATAGCTGCTGCCATGAAAGCCGCTTATTGTAGTATTGCAGTTGAATCTACACTCAAGCATCTTGACGCAGGAATATCAAACCCTATTTACGGCAAAGCGGTAAAGAGGATATGGGAAGTTAGGGTTCATGATATGCATAACGAGGGAAGTAGTTTTCTATTATCAGATGAATTGAAAGAATGGAAAAGTGAGATTGAGAAATCGCTTTTGGATGGGGAAGTTAGGAAGAAGCTTGCTTCCATTCCGTTTACTCGAAGAGACGCGATTGTAAAGGTGCAAGCTTTTTTGGCTGAAGCTTGGGAGGATTTAGGCCCTTCTTTTCTTGAATCAGCTGCGAAGAATCAGTTGGATTCGAGTGTGGGTGGCTTGCAGATGAAGAAACAACATGAGAAAGTTTCTCCGATAGAAATTCTGAAAGACAATGAGAAGGCTGAAGGGAAGTTTACTACTGTTGTTGATGTTGAGAAAGTGGATTTATCAGCCTCTTGCGGAAAAGCGGACACTTTGCCAATTAACGAGAAGACGAAGAATGGGGAATCTCTTAAGTGTAGTTCTGTGGAGTTGCAAACTTTGGCCAAGGATTCTGGTTTGGTAATTGAGGACACGAATGAGGAGCCACAAATGGAAAACCCGAGTTTGGATGCAAACTTGCCCAACGCACAAGCTTGCCAGGGTAGTAATAATAACGAGACTAATCTTAATGAGACAACTTCTGTTCATCAAAGTGATGCTCATCGCCCTAACTTGATGAAACCAAATAGTACTGCTCGAACTCATGAGTGGGATGATTCGATAGATGGCTTACAGGCTAGTAAATTTAGTTTGCCTAGTCCAAAGAGGAGGAAACATTCTCCATTGAAGCCGTATGAACCAAAAAACATCATAAAAAGGAGAAAACCAAAAAAATGGAGTAAATTGGAAGAGGATACCCTAAGAACCGGCGTAAACACATTTGGCATAGGAAAATGGAAACTAATCCTTAATGCGTATACATTTGAAGAGAGAACTGAAGTTGATTTGAAGGACAAATGGAGAAATATGATGCGGTATGGAGCCCAATGA 1317 0.4032 MDGEIRVWCLEHLLRKSSIKTNLINKLISKISLSNTDYRTKKTIILRTLEDALSEAFIPEYMLQIFEVLEKLLLCHDSSNPNSNSIAAAMKAAYCSIAVESTLKHLDAGISNPIYGKAVKRIWEVRVHDMHNEGSSFLLSDELKEWKSEIEKSLLDGEVRKKLASIPFTRRDAIVKVQAFLAEAWEDLGPSFLESAAKNQLDSSVGGLQMKKQHEKVSPIEILKDNEKAEGKFTTVVDVEKVDLSASCGKADTLPINEKTKNGESLKCSSVELQTLAKDSGLVIEDTNEEPQMENPSLDANLPNAQACQGSNNNETNLNETTSVHQSDAHRPNLMKPNSTARTHEWDDSIDGLQASKFSLPSPKRRKHSPLKPYEPKNIIKRRKPKKWSKLEEDTLRTGVNTFGIGKWKLILNAYTFEERTEVDLKDKWRNMMRYGAQ 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01018 438 ProSiteProfiles Myb-like domain profile. 380 433 IPR001005 -
Vivi3g01018 438 CDD SANT_TRF 386 434 - -
Vivi3g01018 438 Pfam Myb-like DNA-binding domain 386 432 IPR001005 -
Vivi3g01018 438 PANTHER MYB TRANSCRIPTION FACTOR 3 435 - -
Vivi3g01018 438 SMART sant 384 435 IPR001005 -
Vivi3g01018 438 MobiDBLite consensus disorder prediction 304 344 - -
Vivi3g01018 438 MobiDBLite consensus disorder prediction 354 373 - -
Vivi3g01018 438 MobiDBLite consensus disorder prediction 304 340 - -
Vivi3g01018 438 SUPERFAMILY Homeodomain-like 382 434 IPR009057 -
Vivi3g01018 438 Gene3D - 377 436 - -
Vivi3g01018 438 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 380 437 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01018 Vivi-Chr3 17021634 17024540 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01018 8 433 Single Myb Histone (SMH) Gene Family AT1G15720 28.506 5.24e-23 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi3g01018 Myb_DNA-binding 4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01018 - K11111 psat:127081272 676.011