Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00997 ATGGACGCGGACGGCGGCGAGGAAGATTCTCGCCACGGAGGTTCGGCAGTAACTCATCAAACCGCCGATGAACTCATCGCCAGGTGCATAGCTCCCGTCAAAATCGAATTCCTCCGTCCTCCTCCCGATCGAACTTCCTCCCAAAACGACGATGTTTCTATCCCAAAAGACAAAGCCCCCGTTCTAGCCAAAGAGAAGAAATCCAAACGCCAACTCAAACGCGAACGTCGTCAGGATCAAAAATCAACTAAAAATCTGTGTCCTGAAATTTCCAAGTCTGGTGATGTTAATTCGTGTCGTTATCAAGATAAGTGTCGTTTCAGCCATGATATAGAAGCTTTTAAGGAACAGAAACCGGCTGATTTGGAAGGTGAATGTCCTTTTTTGAAATCTGAAGGGTCTTGTCCTTATGGGCTGTCGTGTAGATTTTTAGGTACTCATGAAGAGGGTAAGCCTTTATCTTCTAATGGACTGGAGAGAAGGTCTGAAGTTAATGGTTTTAGCAAAGATGTTCAAAAGCTTTTGTGGAAAAATAAGATGACTTTCCCCAAGGCTGATGCAGTACTCAAAAGCCTTGGTCTCTTGTCTAAGTCAAAAGGGAATGCCTTGGAAAACAAAGATGGTGGTGACAAATGTGTTCAGTCTGATGACATTGGTTCTTGTGGGGTTACATCTGAGTTGGAAAACAAAGATGTCGTTGACAAATGCCATCAGTCTGATGATGATGATGATTCTTTTGGGGTGATCGTTGACTCGGATTCTAAGTTAGAAGGCTCTGTAGAGGTTCTAAAAGATGCCGATGTCATCAACAGAGAACTTGAATCTGATGTACATTGTCCCCTGAAGAGAAGAAAAACTGCAGAAGATTGTGGTGTTGAGGAGACAAAAACTGAAGGTGTGAATGTTGCTGGTCAAAATATTGACGGAAGCTGCATAAGATCTGAACCAGAGGCAGGAACTGAAGCTATAACCCCAGAAACTGATATAAGCTTGAAATCTCACTCGCGTGAGAAGAAGCTTATTGATTTCAGGGATAAGTTGTATCTTGCCCCCTTGACCACTGTTGGAAATCTCCCTTTCCGGAGAGTTTGCAAAGTATTAGGAGCTGATGTAACATGTGGTGAAATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCTTCAGAATGGGCATTGCTGAGACGCCATTCATCTGAAGATTTATTTGGTGTACAAATCTGTGGTGCATATCCAGATTCTGTGGCGCGAACAGTTGAACTAATAGAAAATGAATGTTCAGTAGATTTCATTGATATAAATATGGGCTGCCCTATTGACATTGTTGTGAACAAGGGTGCTGGATCAGCTCTTCTTACAAAACCAATGCGCATGAAAAATGTTGTAGAAGTCGCTTCAGGCACAGTTGATATACCAATAACTATCAAGGTTCGGACAGCTTATTTTGAAGGGAAGAACCGTATTGACTCAGTGATAGCTGACTTTAGCTCTTGGGGAACTAGTGCAGTGACAATACACGGTAGGTCACGGCAACAACGCTATAGCAAGCTTCCTGACTGGGATTACGTATATCAATGTACCAAGAAAGCTCCTAAAAATTTGCAAGTAATGGGGAATGGAGATGTTTTTTCATTTGAAGACTGGAACAAGCACAAAACTGAATGCCCCGAGCTTGCTACATGCATGATTGCCCGTGGTGCACTGATTAAACCTTGGATATTTACAGAGATCAAGGAACAGCGACATTGGGACATCAGTTCCGGCGAGCGGTTAAATATTTTCAAAGATTTTGTGCATTTTGGACTTCAACATTGGGGTTCCGATACCAAAGGAGTGGAGACAACCAGGCGGTTCTTGTTGGAATGGCTTAGCTACACCTGTAGGTACATACCTGTAGGTCTTATGGAAGTTGTTCCACAACGAATAAATTGGCGTCCACCATCTTACTACGGGCGTGATGACCTTGAGACACTGATGGCCTCAGACTCCGCAGCTGACTGGGTACGATTATCTGAGATGTTACTTGGCAAAGTTCCAGATGGCTTTACTTTTGCACCAAAGCATAAATCAAATGCTTACGACAGAGCAGAAAATGGCTAA 2097 0.432 MDADGGEEDSRHGGSAVTHQTADELIARCIAPVKIEFLRPPPDRTSSQNDDVSIPKDKAPVLAKEKKSKRQLKRERRQDQKSTKNLCPEISKSGDVNSCRYQDKCRFSHDIEAFKEQKPADLEGECPFLKSEGSCPYGLSCRFLGTHEEGKPLSSNGLERRSEVNGFSKDVQKLLWKNKMTFPKADAVLKSLGLLSKSKGNALENKDGGDKCVQSDDIGSCGVTSELENKDVVDKCHQSDDDDDSFGVIVDSDSKLEGSVEVLKDADVINRELESDVHCPLKRRKTAEDCGVEETKTEGVNVAGQNIDGSCIRSEPEAGTEAITPETDISLKSHSREKKLIDFRDKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDSVARTVELIENECSVDFIDINMGCPIDIVVNKGAGSALLTKPMRMKNVVEVASGTVDIPITIKVRTAYFEGKNRIDSVIADFSSWGTSAVTIHGRSRQQRYSKLPDWDYVYQCTKKAPKNLQVMGNGDVFSFEDWNKHKTECPELATCMIARGALIKPWIFTEIKEQRHWDISSGERLNIFKDFVHFGLQHWGSDTKGVETTRRFLLEWLSYTCRYIPVGLMEVVPQRINWRPPSYYGRDDLETLMASDSAADWVRLSEMLLGKVPDGFTFAPKHKSNAYDRAENG 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00997 698 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 77 156 - -
Vivi3g00997 698 ProSiteProfiles Zinc finger C3H1-type profile. 81 112 IPR000571 GO:0046872
Vivi3g00997 698 CDD DUS_like_FMN 346 581 IPR035587 -
Vivi3g00997 698 Gene3D - 76 155 - -
Vivi3g00997 698 SMART c3hfinal6 82 111 IPR000571 GO:0046872
Vivi3g00997 698 SMART c3hfinal6 122 149 IPR000571 GO:0046872
Vivi3g00997 698 Pfam CCCH-type zinc finger 86 110 IPR041367 -
Vivi3g00997 698 SUPERFAMILY FMN-linked oxidoreductases 346 659 - -
Vivi3g00997 698 ProSiteProfiles Zinc finger C3H1-type profile. 125 150 IPR000571 GO:0046872
Vivi3g00997 698 MobiDBLite consensus disorder prediction 38 89 - -
Vivi3g00997 698 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 342 584 - -
Vivi3g00997 698 ProSitePatterns Uncharacterized protein family UPF0034 signature. 430 448 IPR018517 GO:0008033|GO:0017150|GO:0050660
Vivi3g00997 698 MobiDBLite consensus disorder prediction 1 21 - -
Vivi3g00997 698 Gene3D Aldolase class I 342 584 IPR013785 -
Vivi3g00997 698 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 21 692 - -
Vivi3g00997 698 Pfam Dihydrouridine synthase (Dus) 349 583 IPR035587 -
Vivi3g00997 698 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00997 Vivi-Chr3 16581461 16586633 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi3g00997 Dus 4.9e-48 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00997 K05544 - gmx:100783494 1051.58