Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00993 ATGAACGCCGAAGACGACGAACTTCAACCTAACCAATCTCCTCCACCTACCTCCGATTCACCGCCGCAGCAGCCGCCGGACATCTCAACCAATGCCGACGATATCCACGACGATGTTTCGAATTTCCCCAACGACGTAGACATTGAGGCCGCGGTTGAAGGTGAGGAGACTGATGCCGCCGCGAACACGGAGGTTGCTGTTGATGACGTGGCATCGGTGGAAGGAAGTGAAATGCATGTGATGGATGATGCCTCAATTGAAGATGAAATTGTTGTGGAGGAGAAAGGGAATGAAGGAGCTGACGTTGATATGGAGTCTGAGAACGTGGAAGAGGATGAAGCTAATTTGATAGTCCAAGAGGTGGAGGTTCAAGTTGGGGATGTCAATACAGATGAAGCTCCTTTGACAGGACAACAAGAAGAAGGCGACGACTTCGAGAAGGAGGAAGGCGACGACGAGAAGGAGGAAGACGGCGAAGAGAATGAGGAAGACGGTGACGAGAAGGAAGAAGAAGGAGACGAAGTAGAAGAAGATGGTGAAGAACAACAACATGAAGACGCTGAAGAGCGAGAACAAGAAGAAGAAGAAGCTGAAGAAGAAGCTGATGCTGATGTTGATGGTGTTTTGGCAAAAGATAAAGAGGCTGCGGAGGAGATGGAGGTGGCGGAGGAGCCGAGTGCCAATGGTGGAAAAAGGAAGCGTGGGAATGGGAAGAATTCAAAGGCCAGTAGTGGGAGAGTTCCTTCAAAGAAAAAGACGGAAGAAGATGTCTGTTTCATTTGCTTCGATGGAGGTGAACTTGTTCTCTGTGACCGCAGGGGTTGTCCCAAGGCTTACCACCCTTCCTGCATTAATCGGGACGAAGCCTTCTTCCGAGCCAAGGGAAAGTGGAATTGTGGTTGGCATCTTTGCAGCATCTGTGAGAAGAATCCATACTACTTCTGTTATACATGTACATTCTCTTTGTGCAAGGGTTGTATCAAAGATGCTGTTATGTTATGTGTTAGGGGAAACATGGGATTTTGCGAGACATGCATGAAAACTGTAATGTTGATTGAACAGAAGGAGGAGGGAAACACCACGGGACAACAAGTTGATTTTGATGACAAAAGTAGCTGGGAATATCTTTTCAAGGATTACTATGTAGATCTAAAAGAAAAGCTGTCTCTAACATTTGATGAACTTGCACAAGCTAAAAACCCTTGGAAGGGATCTGGTAAGCTTCCTTCTAAAGATGAATCGGCGGATGAACTTTTTGATGCCACCAATGATAAAGGGTCAGATTCAGATAGCTCTTATGAGAATGTAAATTTGGGTCGGTCTAAGAAAAGAAAATCCAAGAGGCGTGCAAAGTCTCGTTCCAAACGTGGCGCAGATGGGCCATCTACAGAAGAAAGTTCTGAGTGGGCTTCAAAGGAGCTCTTGGAGTTTGTTATGCACATGAGGAATGGAGATAAATCTATGTTGTCACAATTTGATGTTCATGCTCTTTTGCTAGAATATATTAAAATAAATGACCTTCGAGATCCGCGCCGAAAAAGTCAGATAGTTTGTGATGCGAGGCTTCAAGATTTGTTTGGCAAACCCAGAGTTGGACATTTTGAAATGTTAAAACTTCTTGAATCCCATTTCTTGGATTCACAGGCTGAAGATCATCAGGGAAGTGTTGTTGATACTGAAGTTAGTCAGGAGGGTGATGGCAATGGTGACACATATACTAAAGCTGGAAAAGATAAGAAACGTAAAATTCGTAAAAAGGGCGATGGGAGAGGACTTCAATCTAATGTTGATGATTATGCAGCCATTGATAATCATAATATTAATTTAATTTATTTAAGACGCAATTTAGTGGAGGATTTACTTGAAGATATAGATAAGTTTCATGATAAGGCTGTTGGTTCTTTTGTGAGAATAAGAATTTCTGGCAGTGGTCAGAAGCAAGACTTGTATAGGCTGGTTCAGGTTGTAGGTACATGTAAAACAGAAGAGCCATATAAAGTTGGTAAAAAGATGACCGATATCTTGCTAGAAATCTTAAATTTAAACAAGACAGAAATTGTATCAATGGATATCATCTCAAATCAGGAGTTCACAGAGGATGAGTGCAAGCGCCTCCGCCAAAGCATAAAATGCGGCCTCATTAATCGGATGACTGTGGGTGACATTCAGGAGAAATCGTTGACACTTCAGGCAGTTAGAGTAAAGGATTGGCTGGAAGCAGAGATAGTACGGCTAAGTCACCTTCGTGATAGAGCTAGTGAGAAAGGACGCAGAAAAGAGCTTAGAGAATGTGTAGAGAAATTGCAGCTTTTGAAAACCCCTGAAGAACGGCAACGTAGATTGGAGGAAATTCCAGATATCCATGTTGATCCAAAGATGGATCCAAGTTATGAGTCTGACGAAGGAGATGAAATGGAGGATAAACGACAAGAAAGCTTCACGAGACCTAGAGGGTCGACCGCGTTTGGAAGGAAGGGGAGAGAAATTGCTTCGCCTAGAAGTGGTTCCATTTCAAGTGATTCTTGGAGTGGTACAAGAAATTATTCTCATATGAATCAGGAACTCAGCAGAAATTTATCTAATAAGGGATTTTCAGTCAAAGGTGATGATTTTTCCAATGCTGGCGAGGCTTTAAATGATGCTCAATTGCATCAGGGGAGAGATAGGGAGTCACAACTATCTAATAGTCGAGAGAGGCAAAAGCTGCGGTCTTCAAGCTGGGAGAGTGGTATTAAAAATATCCAGCCATTGGTAACAACCGAGTCTTTTTCTAATGCGTTGTCAGAAGCTGCCACAGCACCATCTTCTGCCGGAGTAGCAGCCCCAGATGTGAAAATTAATGAAACTGAAAAGATGTGGCATTATCAGGATCCATCTGGTAAAGTTCAGGGTCCATTTTCCATGGTGCAACTTCGCAAATGGAATAATACCGGATACTTCCCTACTGATTTGAAGATTTGGAAAGCCACCGAGAAACAAGAGGAGTCTATACTCTTAACTGATGTCTTAGCTGGCAAATTTTCAAAAGAACCGTCCGTTGTGGAAAAAACTCCTAAGGCTCAAAACCACTCATCCTCGCTCTCTAGGATGTCGCCTATGGCTGCCCAAGGTTTAACAGGTAAAACTTCTCCATTGGCAGTTGAGGTCCCAAAGAATCCTGGAAATGGTTGGGGGTCCGATAGCGGTGTCAGAAATGAATCAACAAATCTTCCTTCGCCTACTCCCCAAACTGCTTCAGGTGGGTTGAGGGAGCATACTTTTGAAAATTGGTCACCAACACCCGGCCAGATGGCTGGGTCTGTCTTGGGAAATTCGTTCCCTAGCGGTATCAGAGGTTTGCAGGCCTCCGTGGCAGTAAACTCACAACCTGGTATGGCTAGTGATACTACTCAAGTACACCTTCAAGCAACAGAAATGGCACAAGCTCTGGCTGCAGGTATTGACATTAAAATGACGGCTTCAAATATGCAAAATCAGATTAGTCATAATAGTCATAATTCTCGTGCTGAAGCTCAAGGGTGGGGTCAAAATGTGGTTCCAAAGCCAGAATCACAGGCCTGGGTAGGCACTCCATCCCAAAGGGTAGAACCAAATAATTCTGCCACCATGCCTGCCCAACCGACTTCCCATGGTCTATGGGGTGATGCTGCTTCTGTTCAGAACTCTGCCTCATCTAATACAGGTAATCAAACTGGGAGCTTACCCACACATGGTTTTCCAGGCATGAGTGCACCTGGGCCATGGAGACCACAAGTTGCAGGTAATCAAGCAAATGTCATGGCTCCACCACCGCCCAATGTACCCTGGGGCATTAACATGCCAGGAAATCAGAATATTAACTGGGGTGGTACTATACCCGCCAATATGAATGTCAATTGGATGCCTGCACCAGGGCCAGCACCCGGAAATTCCCTTCCAGGATGGGTAGCTCCTACTCAGGGGCTACCTCCAGTTAATGCAAATGCAGGTAACTGGGTAGCACCTGGTCAAGGTCATCCGCATGCAAATGCAAATGCAGGTTGGGCTGTGCCTGGTCAAGGGCCAGCACCTAGAAGTGCCAATCCTCCTTGGGCTGCATCTGGTGGGAACCCAGGTATGCGGGGAAACGAACAAAGTCATAATGGAGATAGGTTTCCCAACCAAGGGGAACGTGGCACCCGTGGTGGAGATAACGGAGATAGGTTTCCCAACCAAGGGGAACGTGGCACCCGTGGTGGAGATTCTGGTCGTGAAGGTAAACCTTGGAACAGACAGTCATCATTTAGAGGCGGAAGCAGAGGAAGAGGAGGAGGTTCTTCTAGGCCTCTGGGCGGAGGACAAAGAGGAATCTGCACGTATCATGAGAGTGGACATTGCAGGTGGGGAGCTACCTGTAATTACCAACACAATTAA 4392 0.4538 MNAEDDELQPNQSPPPTSDSPPQQPPDISTNADDIHDDVSNFPNDVDIEAAVEGEETDAAANTEVAVDDVASVEGSEMHVMDDASIEDEIVVEEKGNEGADVDMESENVEEDEANLIVQEVEVQVGDVNTDEAPLTGQQEEGDDFEKEEGDDEKEEDGEENEEDGDEKEEEGDEVEEDGEEQQHEDAEEREQEEEEAEEEADADVDGVLAKDKEAAEEMEVAEEPSANGGKRKRGNGKNSKASSGRVPSKKKTEEDVCFICFDGGELVLCDRRGCPKAYHPSCINRDEAFFRAKGKWNCGWHLCSICEKNPYYFCYTCTFSLCKGCIKDAVMLCVRGNMGFCETCMKTVMLIEQKEEGNTTGQQVDFDDKSSWEYLFKDYYVDLKEKLSLTFDELAQAKNPWKGSGKLPSKDESADELFDATNDKGSDSDSSYENVNLGRSKKRKSKRRAKSRSKRGADGPSTEESSEWASKELLEFVMHMRNGDKSMLSQFDVHALLLEYIKINDLRDPRRKSQIVCDARLQDLFGKPRVGHFEMLKLLESHFLDSQAEDHQGSVVDTEVSQEGDGNGDTYTKAGKDKKRKIRKKGDGRGLQSNVDDYAAIDNHNINLIYLRRNLVEDLLEDIDKFHDKAVGSFVRIRISGSGQKQDLYRLVQVVGTCKTEEPYKVGKKMTDILLEILNLNKTEIVSMDIISNQEFTEDECKRLRQSIKCGLINRMTVGDIQEKSLTLQAVRVKDWLEAEIVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEIPDIHVDPKMDPSYESDEGDEMEDKRQESFTRPRGSTAFGRKGREIASPRSGSISSDSWSGTRNYSHMNQELSRNLSNKGFSVKGDDFSNAGEALNDAQLHQGRDRESQLSNSRERQKLRSSSWESGIKNIQPLVTTESFSNALSEAATAPSSAGVAAPDVKINETEKMWHYQDPSGKVQGPFSMVQLRKWNNTGYFPTDLKIWKATEKQEESILLTDVLAGKFSKEPSVVEKTPKAQNHSSSLSRMSPMAAQGLTGKTSPLAVEVPKNPGNGWGSDSGVRNESTNLPSPTPQTASGGLREHTFENWSPTPGQMAGSVLGNSFPSGIRGLQASVAVNSQPGMASDTTQVHLQATEMAQALAAGIDIKMTASNMQNQISHNSHNSRAEAQGWGQNVVPKPESQAWVGTPSQRVEPNNSATMPAQPTSHGLWGDAASVQNSASSNTGNQTGSLPTHGFPGMSAPGPWRPQVAGNQANVMAPPPPNVPWGINMPGNQNINWGGTIPANMNVNWMPAPGPAPGNSLPGWVAPTQGLPPVNANAGNWVAPGQGHPHANANAGWAVPGQGPAPRSANPPWAASGGNPGMRGNEQSHNGDRFPNQGERGTRGGDNGDRFPNQGERGTRGGDSGREGKPWNRQSSFRGGSRGRGGGSSRPLGGGQRGICTYHESGHCRWGATCNYQHN 1463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00993 1463 Gene3D - 951 1010 IPR035445 -
Vivi3g00993 1463 Coils Coil 177 204 - -
Vivi3g00993 1463 CDD Bbox1 303 329 - -
Vivi3g00993 1463 ProSiteProfiles Zinc finger PHD-type profile. 255 321 IPR019787 -
Vivi3g00993 1463 ProSiteProfiles Zinc finger C3H1-type profile. 1438 1463 IPR000571 GO:0046872
Vivi3g00993 1463 ProSiteProfiles Plus3 domain profile. 601 734 IPR004343 GO:0003677
Vivi3g00993 1463 MobiDBLite consensus disorder prediction 558 590 - -
Vivi3g00993 1463 MobiDBLite consensus disorder prediction 776 814 - -
Vivi3g00993 1463 FunFam Zinc finger CCCH domain-containing protein 19 247 347 - -
Vivi3g00993 1463 CDD GYF 950 1005 IPR003169 GO:0005515
Vivi3g00993 1463 MobiDBLite consensus disorder prediction 401 467 - -
Vivi3g00993 1463 ProSitePatterns Zinc finger PHD-type signature. 258 318 IPR019786 -
Vivi3g00993 1463 CDD SWIB-MDM2_like 469 544 - -
Vivi3g00993 1463 ProSiteProfiles SWIB/MDM2 domain profile. 463 546 IPR003121 -
Vivi3g00993 1463 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 162 1463 - -
Vivi3g00993 1463 MobiDBLite consensus disorder prediction 137 203 - -
Vivi3g00993 1463 MobiDBLite consensus disorder prediction 880 906 - -
Vivi3g00993 1463 MobiDBLite consensus disorder prediction 1058 1082 - -
Vivi3g00993 1463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 350 IPR013083 -
Vivi3g00993 1463 Gene3D - 603 731 IPR036128 GO:0003677
Vivi3g00993 1463 MobiDBLite consensus disorder prediction 204 231 - -
Vivi3g00993 1463 MobiDBLite consensus disorder prediction 882 905 - -
Vivi3g00993 1463 Pfam GYF domain 953 993 IPR003169 GO:0005515
Vivi3g00993 1463 MobiDBLite consensus disorder prediction 1365 1379 - -
Vivi3g00993 1463 MobiDBLite consensus disorder prediction 409 424 - -
Vivi3g00993 1463 MobiDBLite consensus disorder prediction 1 42 - -
Vivi3g00993 1463 SUPERFAMILY GYF domain 945 1003 IPR035445 -
Vivi3g00993 1463 ProSiteProfiles GYF domain profile. 950 1004 IPR003169 GO:0005515
Vivi3g00993 1463 FunFam Zinc finger CCCH domain-containing protein 19 952 1009 - -
Vivi3g00993 1463 CDD PHD5_NSD 257 302 - -
Vivi3g00993 1463 Pfam SWIB/MDM2 domain 471 544 IPR003121 -
Vivi3g00993 1463 MobiDBLite consensus disorder prediction 776 845 - -
Vivi3g00993 1463 MobiDBLite consensus disorder prediction 124 248 - -
Vivi3g00993 1463 SMART rtf1 601 711 IPR004343 GO:0003677
Vivi3g00993 1463 SMART gyf_5 951 1006 IPR003169 GO:0005515
Vivi3g00993 1463 Gene3D SWIB/MDM2 domain 458 554 IPR036885 -
Vivi3g00993 1463 SUPERFAMILY FYVE/PHD zinc finger 253 308 IPR011011 -
Vivi3g00993 1463 SUPERFAMILY SWIB/MDM2 domain 468 549 IPR036885 -
Vivi3g00993 1463 MobiDBLite consensus disorder prediction 1320 1439 - -
Vivi3g00993 1463 MobiDBLite consensus disorder prediction 1180 1212 - -
Vivi3g00993 1463 SUPERFAMILY Plus3-like 602 730 IPR036128 GO:0003677
Vivi3g00993 1463 MobiDBLite consensus disorder prediction 1049 1082 - -
Vivi3g00993 1463 Pfam Plus-3 domain 606 709 IPR004343 GO:0003677
Vivi3g00993 1463 MobiDBLite consensus disorder prediction 1186 1212 - -
Vivi3g00993 1463 FunFam Zinc finger CCCH domain-containing protein 19 602 731 - -
Vivi3g00993 1463 SMART swib_2 478 549 IPR019835 -
Vivi3g00993 1463 SMART PHD_3 257 303 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00993 Vivi-Chr3 16486203 16495678 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00993 255 310 PHD Transcription Factor Family AT5G36670 41.071 1.72e-06 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vivi3g00993 Plus-3 2.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00993 - - aprc:113865790 1833.15