Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00984 ATGGAGTTTGCGGTAGCAAAAGCTTTGAAACCGAGTTTACGAAGGGAGTTTGTTTTTCAACAAACGCTTGGTGAGGAACTTTTTAGCCTTAACTCCAATACGGTGGTTGCCGGTGAAGATTTCTCCGTTGACGACCTCCTTGATTTTTCCAACGGCGATGTTCTTCACCATGAGCAACACAACGAGGAAGACGAAGAAGAAAAAGATAGTTTATCTCTTTCCTCTCACTCGCTCTCGGAAGATAGCAACTCGAATTCCAACGACGCTTCCTACGATTCCATTTTCTCAACTGAATTGCTCGTTCCGGATGATGACGTGGCAGGCCTTGAATGGGTTTCTCACTTTGTAGATGATTCTCTACCAGAGCTTTCTCTTCTCTACCCGGTTCATGTTCAAACCAACGAGAATCCTCAAAATGAACCGAACCATGAAAAAATTACCAGAAAAACCAGAACCGTCAAGAGCAGAAAACCAAACCCTCGAGCCTGGGCTTTTAGTCCTTTGATTTTACGTCCATTTTTCCCGTCTACGGTTTTTGTAGAGCCGCCAGCAAAGAAACAGAAGAAAAAGGTTCAGGCCCAGGCCCAGACTCAAGTTGTTGGGGTTGAAGCCCAAGAGGAGGCCCATTTACAGCGACGGTGTAGTCATTGCCAAGTGCAGAAGACACCGCAGTGGAGAACCGGTCCGTTAGGAGCTAAAACTCTATGCAACGCGTGTGGGGTTCGGTATAAATCCGGTCGGCTTTTTTCGGAGTATAGACCGGCTTGTAGCCCAACTTTTAGCAGCGAAATTCATTCCAATAGCCACCGGAAGGTGTTGGAGATGAGGAAGAGGAAAGGGATGGTTGGACAGGAATCCGGTTTATCGGCTCAGACCCAAATAGTTACGAGTTGCTGA 897 0.4682 MEFAVAKALKPSLRREFVFQQTLGEELFSLNSNTVVAGEDFSVDDLLDFSNGDVLHHEQHNEEDEEEKDSLSLSSHSLSEDSNSNSNDASYDSIFSTELLVPDDDVAGLEWVSHFVDDSLPELSLLYPVHVQTNENPQNEPNHEKITRKTRTVKSRKPNPRAWAFSPLILRPFFPSTVFVEPPAKKQKKKVQAQAQTQVVGVEAQEEAHLQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFSSEIHSNSHRKVLEMRKRKGMVGQESGLSAQTQIVTSC 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00984 298 Gene3D - 204 281 IPR013088 GO:0006355|GO:0008270
Vivi3g00984 298 SMART GATA_3 208 262 IPR000679 GO:0006355|GO:0043565
Vivi3g00984 298 MobiDBLite consensus disorder prediction 57 87 - -
Vivi3g00984 298 ProSitePatterns GATA-type zinc finger domain. 214 239 IPR000679 GO:0006355|GO:0043565
Vivi3g00984 298 PANTHER GATA TRANSCRIPTION FACTOR 29 291 - -
Vivi3g00984 298 ProSiteProfiles GATA-type zinc finger domain profile. 208 244 IPR000679 GO:0006355|GO:0043565
Vivi3g00984 298 Pfam GATA zinc finger 214 247 IPR000679 GO:0006355|GO:0043565
Vivi3g00984 298 FunFam GATA transcription factor 203 290 - -
Vivi3g00984 298 PIRSF Txn_fac_GATA_plant 21 297 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vivi3g00984 298 CDD ZnF_GATA 213 270 IPR000679 GO:0006355|GO:0043565
Vivi3g00984 298 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 206 270 - -
Vivi3g00984 298 MobiDBLite consensus disorder prediction 57 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00984 Vivi-Chr3 16369482 16370901 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00984 40 279 C2C2-Gata Transcription Factor Family AT4G36240 46.429 6.00e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi3g00984 GATA 9.3e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00984 - - gmx:100808242 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00984 3 16369482 16370901 Vivi3g00984 3 16369482 16370901 ECH
Vivi3g00984 3 16369482 16370901 Vivi5g02852 5 115620778 115622408 ECH