Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00974 ATGAAGATCCAATGTGATGTTTGTGAGAAAGCTGAGGCTTCCATGTTTTGTCCTTCAGATGAAGCTGCTCTTTGCCATGGATGTGATTTTACTATCCACCATGCTAACAAACTTGCAACCAAACATTCTCGTTTCCCTCTTGTTCATCTCAACTCCAAAGACTACCCTCTTTGTGATATCTGTCAAGAGAGGCGTGGATATCTATTTTGCCAAGAAGATAGAGCGATTCTATGTAGAGAATGTGACGTTCCAATCCATAGAGCAAATGAACATACACAGAAACACAACAGGTTTCTTCTATCTGGTGTGAAGCTTTCAAACAATTCTTTGGACACAGATTCATCATCCACCGCCAGTATTGGTTCTCGATATTCGAAACCAAACATAAAACCAAGATCAGTTTCAAATGAAAATGCTAGTTCTTCTTGCAATGTTGAAGACAACATGGCTAGTGACACTGGTTCAGTTTCAACAAGCAGCATTTCTGAGTACTTGATTGAAACAATACCTGGTTACTGTTTTGAAGATTTTCTTGATGCTTCATTTCCACCAAATGGTTTCTGTAAGAGTCATTATTCAACATTTCAGTACCAAGATCTTCATGTTAACAAGTTTATGAATGGAGTTAAAGAAAACCAGCAAGTTTATGGATGTGCAGTACCAGGAACTGGTGCTACATTATTAAAAAAATCTAGAAACTGTTTGTAA 708 0.3757 MKIQCDVCEKAEASMFCPSDEAALCHGCDFTIHHANKLATKHSRFPLVHLNSKDYPLCDICQERRGYLFCQEDRAILCRECDVPIHRANEHTQKHNRFLLSGVKLSNNSLDTDSSSTASIGSRYSKPNIKPRSVSNENASSSCNVEDNMASDTGSVSTSSISEYLIETIPGYCFEDFLDASFPPNGFCKSHYSTFQYQDLHVNKFMNGVKENQQVYGCAVPGTGATLLKKSRNCL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00974 235 CDD Bbox1_BBX-like 5 47 - -
Vivi3g00974 235 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vivi3g00974 235 SMART bboxneu5 53 100 IPR000315 GO:0008270
Vivi3g00974 235 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vivi3g00974 235 MobiDBLite consensus disorder prediction 110 143 - -
Vivi3g00974 235 CDD Bbox1_BBX-like 57 100 - -
Vivi3g00974 235 Gene3D Classic Zinc Finger 1 98 - -
Vivi3g00974 235 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270
Vivi3g00974 235 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Vivi3g00974 235 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 207 - -
Vivi3g00974 235 FunFam B-box zinc finger protein 21 1 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00974 Vivi-Chr3 16258301 16259634 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00974 1 190 C2C2-CO-like Transcription Factor Family AT1G75540 49.275 3.79e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vivi3g00974 zf-B_box 2.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00974 - - tpra:123898275 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00974 3 16258301 16259634 Vivi3g00974 3 16258301 16259634 ECH