Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00965 ATGGAATTCGGTAGAAAAATAACAATATGCTTGTTCATGATGATCATAATGTGGTGTTACGCAATCGAAGGTAGAGAACCTGTGTTGCATAGGGTTGGAGGTGGAAGGTATACTTGGCGACCAAACGTTAGCTTCACAAATTGGACAAGTTATGAGCATTTCTACCAGGATGATTGGCTATATTTTGGATTTGATAGGAATGTTCATAATGTTCTTGAGGTGAACAAAACAAACTATGAGAATTGTATTGAAACGGATTTCATAAAGAATGTTACAAGAGGAGGAAGAGATGTTGTCCAACTGCTGGAGATGAGGTCGTATTACTATATATGTGGGAGAGGTTTTTGCAACAATGGAATGAAGGTTGAAATAAATATTGAACCAGATCTACCACTTTCTCCAACCATTTTCAGCCAGGCTTCTTCTACAGCAAAAATGAATGTTTTGTTTTCTGTCATAGGTTTAGCTTGGATCTTCATATAA 483 0.3685 MEFGRKITICLFMMIIMWCYAIEGREPVLHRVGGGRYTWRPNVSFTNWTSYEHFYQDDWLYFGFDRNVHNVLEVNKTNYENCIETDFIKNVTRGGRDVVQLLEMRSYYYICGRGFCNNGMKVEINIEPDLPLSPTIFSQASSTAKMNVLFSVIGLAWIFI 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00965 160 SUPERFAMILY Cupredoxins 29 126 IPR008972 -
Vivi3g00965 160 Gene3D - 28 128 IPR008972 -
Vivi3g00965 160 ProSiteProfiles Phytocyanin domain profile. 28 128 IPR003245 GO:0009055
Vivi3g00965 160 PANTHER BLUE COPPER PROTEIN 29 135 IPR039391 GO:0009055
Vivi3g00965 160 Pfam Plastocyanin-like domain 39 120 IPR003245 GO:0009055
Vivi3g00965 160 FunFam Lamin-like protein 26 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00965 Vivi-Chr3 16070070 16070763 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00965 4 142 Phytocyanin Superfamily AT2G27035 48.571 2.72e-49 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00965 - - gmx:100789719 216.468