Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00952 ATGGCTTCTTCTAGTGGAACATCTTCAGGCTATTCAACGCTTCCAAACTCAGGTTCAGAGGAAGATTTGATGCTTCTAATGGATCAAAGAAAAAGAAAGAGAATGATCTCCAATCGCGAATCGGCACGGCGATCTCGAATGAGGAAACAAAAACACTTGGATGATCTTGCACTTCAAGTGAGTCAGCTCAGGAATGAGAATCAACAGATTCTAACATCTGTGAATCTCACAACACAACGTTTCCTGGCTGTTGAATCTGAGAACTCGGTGCTTAGAGCTCAATTGAATGAACTCAACAACAGGTTTGAGTCTTTGAATGAGATCATCAACTTCATGAATGTTGCAAATGGTGTTTTTGAACCTCTTGATAATAGTAACAATAACAACAACTACTTCAACAACCCTTTGAATATGGCTTACTTGAATCAACCAATCATGGCTTCTGCTGACATGAACATGATGCATTATTGA 471 0.3928 MASSSGTSSGYSTLPNSGSEEDLMLLMDQRKRKRMISNRESARRSRMRKQKHLDDLALQVSQLRNENQQILTSVNLTTQRFLAVESENSVLRAQLNELNNRFESLNEIINFMNVANGVFEPLDNSNNNNNYFNNPLNMAYLNQPIMASADMNMMHY 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00952 156 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 28 91 IPR004827 GO:0003700|GO:0006355
Vivi3g00952 156 FunFam BZIP transcription factor 28 79 - -
Vivi3g00952 156 MobiDBLite consensus disorder prediction 1 19 - -
Vivi3g00952 156 MobiDBLite consensus disorder prediction 1 21 - -
Vivi3g00952 156 Coils Coil 46 73 - -
Vivi3g00952 156 PANTHER BZIP TRANSCRIPTION FACTOR 44 3 152 - -
Vivi3g00952 156 CDD bZIP_plant_GBF1 31 81 IPR045314 GO:0003700|GO:0006355
Vivi3g00952 156 SMART brlzneu 26 90 IPR004827 GO:0003700|GO:0006355
Vivi3g00952 156 Coils Coil 81 115 - -
Vivi3g00952 156 Pfam bZIP transcription factor 30 72 IPR004827 GO:0003700|GO:0006355
Vivi3g00952 156 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 33 48 IPR004827 GO:0003700|GO:0006355
Vivi3g00952 156 Gene3D - 28 83 - -
Vivi3g00952 156 SUPERFAMILY Leucine zipper domain 30 81 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00952 Vivi-Chr3 15854741 15855994 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00952 26 150 bZIP Transcription Factor Family AT4G34590 56.391 2.54e-44 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vivi3g00952 bZIP_1 5.5e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00952 K25786 - pop:7470005 202.986