Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00945 ATGGCTCCAAAGAAGGAAAAAGCTCCTCCACCGTCCTCCAAGCCCGCCAAGTCTGGTGGTGGCAAACAGAAGAAGAAGAAGTGGAGCAAGGGTAAGCAGAAGGAGAAGGTGAATAACATGGTGTTGTTTGATCAGGGAACTTATGATAAGCTTCTCACTGAGGCTCCCAAATACAAGCTCATTACTCCTTCCGTTCTTTCTGATCGTTTGAGGATTAATGGATCACTTGCAAGGAGAGCCATAAGAGATTTGATGGCTAAAGGTTTGATCAGGTTGGTATCATCCCACTCAAGCCAACAGATTTACACCAGAGCTACAAACACCTAA 327 0.4526 MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKYKLITPSVLSDRLRINGSLARRAIRDLMAKGLIRLVSSHSSQQIYTRATNT 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00945 108 MobiDBLite consensus disorder prediction 1 36 - -
Vivi3g00945 108 Pfam S25 ribosomal protein 7 105 IPR004977 -
Vivi3g00945 108 PANTHER 40S RIBOSOMAL PROTEIN S25 1 108 IPR004977 -
Vivi3g00945 108 FunFam 40S ribosomal protein S25 21 108 - -
Vivi3g00945 108 Gene3D - 21 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00945 Vivi-Chr3 15580255 15582035 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00945 1 108 Cytoplasmic Ribosomal Protein Gene Family AT2G21580 88.889 1.80e-55 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00945 K02975 - ming:122063087 158.688