Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00935 ATGTGTGACCTCATGTCTGCGCCTGTTGACCGGCCTATTAAACTCGGTTATGAAATGGAATATTCTGAGGATGAAAAGAAGAAAAGGGTTGGGTCTATTAAGAAGGTGGCATTGAGTGCCTCTAGTAAGTTCAAGAACTCCTTCACCAAGAAGGGGAGGAAGCATAGCAGGGTTATGTCAATTTCTATTGAAGATAATTTTGATGCAGAAGAGTTAACCATTGTTGACGCTTTTCGCCAAACACTCGTCTTGGAAGAGCTCTTACCCTCAAAGCATGATGATCCTCATATGATGCTAAGATTTTTGAGGGCAAGAAAGTATGACATAGAGAAAACAAAACAAATGTGGTCAGATATGCTGAAGTGGAAAAAGGAGTTTGGTGCTGACACTATCATGGAGGATTTTGAATTTAAGGAGCTTGATGAAGTTCTAAAATACTATCCTCAAGGGCACCATGGAGTTGATAAAGAAGGAAGACCTGTTTACATTGAAAGATTGGGTCAGGTTGATTGTAACAAGCTGCTGCAAGTAACATCGGTCGAACGTTATCTCAAGTACCATGTCAGGGAGTTTGAGAGGACTTTTGCTATTAAGTTGCCTGCATGTTCAATTGCAGCAAAGAAGCACATTGATCAAAGCACAACTATCTTGGATGTGCAAGGAGTGGGTCTTAAAAGTATGAACAAAGCTGCAAGGGATCTCCTCCAGAAGCTTCAGAAGATTGATGGTGACAACTATCCTGAGTCGTTGAACCGTATGTTCATCATCAATGCTGGTTCTGGATTTAGGCTCTTGTGGAACACTGTTAAATCATTCCTAGATCCCAAAACCACCTCAAAAATCCATGTGCTAGGTAACAAGTACCAGAGCAAGTTGCTAGAAATCATTGATGCCAGTGAACTTCCAGAGTTCTTGGGAGGTACCTGTACTTGTGCAGATAAAGGCGGTTGCATGCTATCTGACAAGGGTCCATGGAATGATCCAGAGATCTTGAAGCTGGCTCAAAATGGTGTTGGGAAATGCGCAAGAACGGTCTTAGCCGGAATCGAGGAGAAAACAGTCAACCAAGATGAAACTGCATATCAGAAGGGATTCAAAGAAGCATATCCAGAGACACATGATGTTCATTGTTTATCCACGGATACACCCAAATCCTATGCTGTTGCAAAGAAATGCGGTGTTTATAAGTATGATTCCTTTGTTCCAGTACTTGACAAAGGAGTTGATTCATCATGGAAGAAAACAATGCAAAATGATAAATATGCAATTTCTAAAGATTTCTCCAACAATAATAAAAATTATTCTGGTAAACTTAGCAGTCAATTTGTTGGTGGAATAATGGCACTTGTCATGGGAATCGTAACCATGATTCGCATGACAAGTAGCATGCCAAGGAAAATCACAGAAGCAGCACTTTATGGTGGCAACTCAGTGTATTATGAACACAATATGTTGAAAGCACCTGCCATTTCAAACAATGACTACATGACCATAATGAAACGCATGGCTGAACTTGAAGAGAAGGTTGCTGTTCTCAGTGCTAGACCTGTCATGTCTCCAGAAAAAGAAGAAATGCTGAATAATGCTCTCACCAGGGTCACTAGTCTTGAACAAGTCTTGGGTGCAACCAAAAAGGCACTAGATGATGCTCTTGCTAGACAAGATGGTCTTCAAGCTCAAATTGACAAGAAGAAAAAGAAGAAGAAGTTGTTCTGCTTCCGTTAG 1725 0.4081 MCDLMSAPVDRPIKLGYEMEYSEDEKKKRVGSIKKVALSASSKFKNSFTKKGRKHSRVMSISIEDNFDAEELTIVDAFRQTLVLEELLPSKHDDPHMMLRFLRARKYDIEKTKQMWSDMLKWKKEFGADTIMEDFEFKELDEVLKYYPQGHHGVDKEGRPVYIERLGQVDCNKLLQVTSVERYLKYHVREFERTFAIKLPACSIAAKKHIDQSTTILDVQGVGLKSMNKAARDLLQKLQKIDGDNYPESLNRMFIINAGSGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCADKGGCMLSDKGPWNDPEILKLAQNGVGKCARTVLAGIEEKTVNQDETAYQKGFKEAYPETHDVHCLSTDTPKSYAVAKKCGVYKYDSFVPVLDKGVDSSWKKTMQNDKYAISKDFSNNNKNYSGKLSSQFVGGIMALVMGIVTMIRMTSSMPRKITEAALYGGNSVYYEHNMLKAPAISNNDYMTIMKRMAELEEKVAVLSARPVMSPEKEEMLNNALTRVTSLEQVLGATKKALDDALARQDGLQAQIDKKKKKKKLFCFR 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00935 574 SMART CRAL_TRIO_N_2 94 119 IPR011074 -
Vivi3g00935 574 SMART sec14_4 139 310 IPR001251 -
Vivi3g00935 574 Coils Coil 495 515 - -
Vivi3g00935 574 SUPERFAMILY CRAL/TRIO N-terminal domain 65 135 IPR036273 -
Vivi3g00935 574 Gene3D - 127 338 IPR036865 -
Vivi3g00935 574 Pfam CRAL/TRIO domain 145 307 IPR001251 -
Vivi3g00935 574 Gene3D - 37 126 - -
Vivi3g00935 574 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 18 565 - -
Vivi3g00935 574 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 139 313 IPR001251 -
Vivi3g00935 574 Pfam CRAL/TRIO, N-terminal domain 85 118 IPR011074 -
Vivi3g00935 574 SUPERFAMILY CRAL/TRIO domain 139 334 IPR036865 -
Vivi3g00935 574 CDD SEC14 140 308 IPR001251 -
Vivi3g00935 574 Coils Coil 547 567 - -
Vivi3g00935 574 PRINTS Cellular retinaldehyde-binding protein signature 299 308 - -
Vivi3g00935 574 PRINTS Cellular retinaldehyde-binding protein signature 266 285 - -
Vivi3g00935 574 PRINTS Cellular retinaldehyde-binding protein signature 97 119 - -
Vivi3g00935 574 FunFam SEC14 cytosolic factor 127 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00935 Vivi-Chr3 15386386 15390222 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00935 100 304 Acyl Lipid Metabolism Gene Families AT5G47730 29.469 1.97e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00935 K26544 - gmx:100802579 860.522
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00935 3 15386386 15390222 Vivi3g00935 3 15386386 15390222 ECH
Vivi3g00623 3 10421712 10426795 Vivi3g00935 3 15386386 15390222 PCT