Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00926 ATGAGAAAAAGCGCTGCTATAAAAGAAGGACAAAAAAACGCACACACACAGATATTCACATCTCTTGCATATCTACTGTTAGCCCTTTGGTTCCTTCCCTCATCAGTTCAATCCTCTTCGATCTCTAGCTCTGATCCGTCGTCGCAGTCTTCAACTGATCTGAAATCCATAGCTGTTGAAGTTGTTCTACTGCTGCAAGAAAAGATAAATGATGAAGATGATACCCCGGTTTCAATCCGGCTCCTAGTTCCATCTAAAGTGATTGGGTGTATTATAGGGAGAAGTGGTTCAATCATAAATGAAATTCGGAAGAGAACTAAGGCTGATATTCAAATCTCAAGAAGTAATAAGCCTAAATATGCAGATGACAATGATGAACTTGTTGAGGTGGTAGGTGAGGTTGATTGTGTGAGAGATGCACTAATTCAGATAGTCTTGAGACTAAGGGAGGATGTATTGAGAAAAAGGGACGTTGACCAAAAACCTCCCATTGGTGCTGATTCATTGTACACAGGCAGTTCTGTTCTTTCAGCACCTACTATGCTGCCTTCAGTTCCTGCTGCGGCACTAGCTTATGATCATAGGACTGGAAGTGCAACTGGAACTGGACTAGGCATGCACTCTTCTAGCAGCCGTTATGGATATGATTCTTACTCGATGGCAGACAATGGTTATGGATCTATGTCTTCATATGCTTCCAAGATGTATGAAGGAATGAACATGCAGATGAATTGCTTTTTCTCAGTAGTAAGGATATACCAAGTAGCAAATGTGAAATCTGAATGGAGCTTGATCAAAACTTTTCCTGATTTATCCGGAACAGATCATGAATCATGA 837 0.4086 MRKSAAIKEGQKNAHTQIFTSLAYLLLALWFLPSSVQSSSISSSDPSSQSSTDLKSIAVEVVLLLQEKINDEDDTPVSIRLLVPSKVIGCIIGRSGSIINEIRKRTKADIQISRSNKPKYADDNDELVEVVGEVDCVRDALIQIVLRLREDVLRKRDVDQKPPIGADSLYTGSSVLSAPTMLPSVPAAALAYDHRTGSATGTGLGMHSSSSRYGYDSYSMADNGYGSMSSYASKMYEGMNMQMNCFFSVVRIYQVANVKSEWSLIKTFPDLSGTDHES 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00926 278 Gene3D K Homology domain, type 1 74 152 IPR036612 GO:0003723
Vivi3g00926 278 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 55 219 - -
Vivi3g00926 278 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 70 158 IPR036612 GO:0003723
Vivi3g00926 278 ProSiteProfiles Type-1 KH domain profile. 76 144 - -
Vivi3g00926 278 SMART kh_6 75 149 IPR004087 GO:0003676
Vivi3g00926 278 Pfam KH domain 79 144 IPR004088 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00926 Vivi-Chr3 15178681 15185670 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00926 250 274 U-box Gene Family AT2G33340 68.000 6.26e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00926 K21444 - vvo:131657614 505.368