Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00903 ATGTTGCACTGTTTGAATGCTTCCGGGAATTTACCTACTGAGAGTTGTTCATCCGACATAACAGTGCTGGAAAGACAAACCGAAAGAATGAAGTGGCAACAACAACATCAAGGCTATTTCAATGGTGCCATGTTTCCTTCTTCTGTTCAACAAGTTCAGAATTCTCAAGATTTAGTGGCTCTTCAAATTCCACCTGCAATTTCAAGAACTTTCAGCTCTCCACCTGTTCTCGTCGATGCCAAATTCATTGATTCTAGGACCGAGAAAGAGAATTGTTCTAAGAAGAGGAAATCCGAAAAGGCACATCATAATCATAAGCTCAAGGTTGTTGGTGAAATTGAGAACAAAGAAAAGAGGATTAAACTAGGTGCTGAAGACGGTGAATCGAAAATCACAGGGTACCATAGCACAAAAAAGAATACAAATAGCAACAAGAACAACAAAGAAAACTGTGCAGGAGAAGGTACTTCAAACTCAAAGGGAAATTCAAAAGCTTCTGAGAATCAAAAACTTGACTACATTCATGTTCGAGCGCGTCGCGGACAAGCCACCGATAGTCATAGCTTAGCCGAAAGAGTTAGAAGGGAAAAGATTAGTGAGAGAATGAAGTATTTGCAAGATTTAGTACCAGGATGCAACAAAATTACAGGAAAAGCTGGAATGCTTGATGAAATTATCAATTATGTTCAGTCTCTTCAAAGACAAGTTGAGTTTTTGTCAATGAAATTAGCTACTGTGAATCCAAGGCTTGATTTCAACATTGATGATTTGTTTGAAAAAGAGGTGTTTCCAACTTGTGATGCAAATGCAACTTTTCAAGCCTTGGGAATTTCATCAGAAATGAATAATACCAATCCATATCTTCAGTTCAATTCACCACATCAATTTGTTTCTTATGGTGGATTAGAGGCTGGAATGAACCCTATAGATATGGGGCTAAAAAGGAGCATAAGCGCCCCTGTACCCATTCCTGAGACTTTTATTGATTCTTCTTCTTTCCCTCAAATTCTACCTCCTACAACATGGGAAGGCGATTTCCCTAACCTATACAACATGAATTTTGATCAAGCCAGAACAACATCTTTTCCTTCTCAACCTCAGTTTTTCACAGGTCTAGTTGAAGCTAGCAATCTAAAGATTGAGATGCAGTAG 1152 0.3854 MLHCLNASGNLPTESCSSDITVLERQTERMKWQQQHQGYFNGAMFPSSVQQVQNSQDLVALQIPPAISRTFSSPPVLVDAKFIDSRTEKENCSKKRKSEKAHHNHKLKVVGEIENKEKRIKLGAEDGESKITGYHSTKKNTNSNKNNKENCAGEGTSNSKGNSKASENQKLDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIDDLFEKEVFPTCDANATFQALGISSEMNNTNPYLQFNSPHQFVSYGGLEAGMNPIDMGLKRSISAPVPIPETFIDSSSFPQILPPTTWEGDFPNLYNMNFDQARTTSFPSQPQFFTGLVEASNLKIEMQ 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00903 383 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 180 251 IPR036638 GO:0046983
Vivi3g00903 383 SMART finulus 188 238 IPR011598 GO:0046983
Vivi3g00903 383 CDD bHLH_AtBPE_like 172 257 - -
Vivi3g00903 383 MobiDBLite consensus disorder prediction 130 168 - -
Vivi3g00903 383 Gene3D - 179 252 IPR036638 GO:0046983
Vivi3g00903 383 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 89 295 IPR024097 GO:0006355
Vivi3g00903 383 FunFam Basic helix-loop-helix transcription factor 179 251 - -
Vivi3g00903 383 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 182 232 IPR011598 GO:0046983
Vivi3g00903 383 MobiDBLite consensus disorder prediction 134 168 - -
Vivi3g00903 383 Pfam Helix-loop-helix DNA-binding domain 186 233 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00903 Vivi-Chr3 14818351 14821506 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00903 19 265 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 46.038 2.96e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi3g00903 HLH 2.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00903 - - tpra:123899220 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00903 3 14818351 14821506 Vivi3g00903 3 14818351 14821506 ECH
Vivi3g00903 3 14818351 14821506 Vivi2g03079 2 130759315 130760791 ECH