Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00899 ATGGCTGATTCTGAGTACCGATGCTTTGTTGGTGGACTCGCCTGGGCCACCGACAACGACGCTCTCGACAAAGCGTTTTCCACCTTTGGCGAAATCGTCGAATCGAAGGTTATCCTTGATCGTGAAACTGGAAGATCGAGAGGATTTGGATTTGTTACGTTTGCATCGGAGCAGTCGATGAAAGATGCGATTGAAGGGATGAACGGCCAGGATCTAGATGGACGTAACATCACTGTGAACGAGGCGCAAAGCCGTGGCAGTGGTGGTGGCGGTGGAGGTGGATACCGTGGAGGAGGTGGTGGAGGATATGGAGGTGGAGGTGGTGGTTACAACCGTGGTGGAGGAGGTGGTGGTTATGGAGGAGGTGGAGGAGGTGGTGGTTATGGAGGAGGTGGTGGACGTCGTGATGGTGGAGGTGGTGGATATGGTGGAGGAGGTGGTTATGGAGGTGGTGGTGGCGGATATGGTGGAGGAGGTGGACGGGACCGTGGTTATGGAGATGGTGGATCTCGGTACTCAAGAGGAGGTGGTGGTGGTGGTTCTGAAGGAGACTGGAGGAGTTAA 564 0.5496 MADSEYRCFVGGLAWATDNDALDKAFSTFGEIVESKVILDRETGRSRGFGFVTFASEQSMKDAIEGMNGQDLDGRNITVNEAQSRGSGGGGGGGYRGGGGGGYGGGGGGYNRGGGGGGYGGGGGGGGYGGGGGRRDGGGGGYGGGGGYGGGGGGYGGGGGRDRGYGDGGSRYSRGGGGGGSEGDWRS 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00899 187 Gene3D - 1 104 IPR012677 -
Vivi3g00899 187 MobiDBLite consensus disorder prediction 152 187 - -
Vivi3g00899 187 SMART rrm1_1 7 80 IPR000504 GO:0003723
Vivi3g00899 187 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 84 IPR000504 GO:0003723
Vivi3g00899 187 SUPERFAMILY RNA-binding domain, RBD 4 116 IPR035979 GO:0003676
Vivi3g00899 187 CDD RRM2_NsCP33_like 7 82 - -
Vivi3g00899 187 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 7 179 - -
Vivi3g00899 187 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 77 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00899 Vivi-Chr3 14783069 14784235 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00899 8 86 Eukaryotic Initiation Factors Gene Family AT4G34110 36.709 9.04e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00899 - - ccaj:109800681 153.68