Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00896 ATGGTGGATCGAAGATTCACAGTTTGGTTTGCTTTATTGCTATTGTTTCTGTCTTTTGAGCTAACATTGGAACAGATTGAGATTAAGCCATTGAGTTCACCTACAGAACGTGCAGCACTTCTTCAACTTCGAGCTTCTTTAGGTTTGAGAACCAAAGAATGGCCAAGAAAACCCGACCCTTGCTTAATCTGGATTGGTATAACGTGTCGGAATGGCCGTGTTGTTGGGATCAATATCTCGGGTTTTAGAAGAACAAGAATTGGTAGGAGAAACCCTCAGTTTTCTGTTGATGCTTTGGTTAATTTCACTTTGTTGGAGTCTTTTAATGCCTCTGGTTTTTACCTTCCTGGGGCTATTCCTGATTTGTTTGGGGTTAGTCTTGGTTCGCTTCGCGTGCTTGATCTTCGTTCTTGTTCCATTGGAAATGCTATTCCGAATTCTGTTGGGAATTTGACTAGGCTTACTGCTCTTTATCTTGCTGATAATAATCTTACTGGAAATGTTCCTGATAGTTTAGGTCAACTCTCGTCGCTTTCGGTTCTTGATCTCGCAGGGAATTCTCTTACGGGGATTATACCGGAGTCTTTTGGGTTTCTTGCGAATCTTTCGTCACTTGATTTGTCGGGGAATTTTTTCTCCGGGCCTGTTCCTTCGCGTTTAGGGACTCTTTCTAGGTTACAGTACTTGAACCTTTCTGGTAATAGCTTAAATTCTTTGCCTGCACAATTGGGAGGTCTTGTTAGCTTGGTTGACCTTGATCTTAGTGAGAATTCTTTCTCCGGCGGTGTTCTTCCGGATTTGAAAGGGTTGGGGAACTTGCAGATTGTAGTTCTGAGGAAAAGTAATTTTACTGGTTCTTTGCCTGTTGAGTTGTGGTCGCTGCCGAGGTTGACGTTCGTAGATGTGTCTTCCAATAACTTCAGTGGTTTGCTTCCGAATTCTAGTTCCTCTGTCGATTCGACTGTTGCTGTTCTAAATATATCTCATAATATGTTTTATGGAGGTCTTACACCTGTGCTCAGAAGGTTCAGTTTTGTTGATCTTTCAAACAATTATTATGAGGGTAAGGTTTTGGATTTCATGCATAACGTATCATTAGATAGTAACTGTCTCCAGGATGCGACAAATCAGAAGTCAACGGTGGAATGTGCGTCGTTTTATGTGAATAGGGGGCTCAGTTTTGATAATTTTGGACAACCGAATACGACAAATTCCACAGGAGGTTCTGGGAAAAGTAATAAAACTAAGATTATATTAGCGGCAGTTTTAGGTGGACTGGGTTTACTTGCACTTTTGGTTTTGTTAGTGGTACTGTTGCTTTTGTGCGCTCGTAAAAGGGGTAATTCAAGTCCAAGGGGAAATGGTGTGGGCCCTGCTCCTACTGCAGGCAGTCCTCCGCCTCCTGGTGTATCGATAAACCTTGCAAATGTAGGAGACTCGTTTACGTATCATCAGTTGCTTCAGGCAACGGGAGATTTCAATGATGCAAATCTTATAAAACAAGGCCACACCGGGGATTTCTACAATGGTGTCTTGGAAAATGGGATTCCGATTGTCATCAAAAGGATCGACATGCGATCTATGAAAAAGGACTCTTACCTATCGGAATTGGACTTTTTTAATAAGGTTTCTCATCCGAGATTTGTTCCCTTATTAGGTCACTGCTTAGAAAACGAGAATGAGAAGTTCCTGGTTTATAAACTTATGCCAAAAGGGGACTTGTCTAATTGCTTATTCTTCAAAAACACCACATCTGAAGATGGTTCTTTGCAGTCATTGGACTGGATAACCAGGTTAAAGATTGCTACTGGAGCAGCAGAGGCCATATCGTATCTGCATCATGATTGTATTCCACCTATTGTTCACAGAGATATTCAAGCGAGCAGTATACTTCTCGATGACAAGTATGAAGTTCGGTTAGGAAGTCTAAGTGAAGCCTGTACTCAAGAAGGTGATACCCATCAAAGTAAAATCACCCGGTTTCTGCGATTGCCTCAGTCCTCTGAACAAGGTGCATCTGGTTTACCGACATCTGTTTGTGCCTATGATGTTTATTGCTTTGGGAAAGTGTTACTTGAACTTGTGACTGGTAAGCTGGGTATTAGTGCATCAAGTGAGGCTGAATTGAAGGATTGGTTTGATCAGATTCTACCTTGCATAAGCATGTATGACAAGGAGCCCGTGACAAAAATCGTTGACCCGTCTCTTGTTGTGGACGAGGATTTCTTAGAGGAAGTGTGGGCAATATCCATTGTTGCCAGGTCTTGCCTAAACCCGAAACCTTCAAGACGACCCCCAATGAGATATGTTCTCAAGGCTTTGGAAAACCCTTTAAAAGTTGTAAGAGAAGAAAGTTCGAGTTCTGCGCGTCTTAAAGCAACCTCTTCTAGAGGCTCTTGGAATGCTACTTTGTTTGGTAGTTGGCGTCAGAGCTCGTCTGATGTAACCACAAACCCCGCAGCTTCTGGTACAAAAATAGAAGGAGCAAGTAGTTTGAAGCTTTCGGCAACAAGTAGTTCATCCTCGCGGAGACGTCATTCAAATGAGATATGTCCTGAGCCATCATTTCGCTTACATGATTTAGAGAGGCCGGAGAATGAAGGAAGAGAGGCTTAA 2616 0.4239 MVDRRFTVWFALLLLFLSFELTLEQIEIKPLSSPTERAALLQLRASLGLRTKEWPRKPDPCLIWIGITCRNGRVVGINISGFRRTRIGRRNPQFSVDALVNFTLLESFNASGFYLPGAIPDLFGVSLGSLRVLDLRSCSIGNAIPNSVGNLTRLTALYLADNNLTGNVPDSLGQLSSLSVLDLAGNSLTGIIPESFGFLANLSSLDLSGNFFSGPVPSRLGTLSRLQYLNLSGNSLNSLPAQLGGLVSLVDLDLSENSFSGGVLPDLKGLGNLQIVVLRKSNFTGSLPVELWSLPRLTFVDVSSNNFSGLLPNSSSSVDSTVAVLNISHNMFYGGLTPVLRRFSFVDLSNNYYEGKVLDFMHNVSLDSNCLQDATNQKSTVECASFYVNRGLSFDNFGQPNTTNSTGGSGKSNKTKIILAAVLGGLGLLALLVLLVVLLLLCARKRGNSSPRGNGVGPAPTAGSPPPPGVSINLANVGDSFTYHQLLQATGDFNDANLIKQGHTGDFYNGVLENGIPIVIKRIDMRSMKKDSYLSELDFFNKVSHPRFVPLLGHCLENENEKFLVYKLMPKGDLSNCLFFKNTTSEDGSLQSLDWITRLKIATGAAEAISYLHHDCIPPIVHRDIQASSILLDDKYEVRLGSLSEACTQEGDTHQSKITRFLRLPQSSEQGASGLPTSVCAYDVYCFGKVLLELVTGKLGISASSEAELKDWFDQILPCISMYDKEPVTKIVDPSLVVDEDFLEEVWAISIVARSCLNPKPSRRPPMRYVLKALENPLKVVREESSSSARLKATSSRGSWNATLFGSWRQSSSDVTTNPAASGTKIEGASSLKLSATSSSSSRRRHSNEICPEPSFRLHDLERPENEGREA 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00896 871 FunFam Putative LRR receptor-like serine/threonine-protein kinase 569 794 - -
Vivi3g00896 871 ProSiteProfiles Leucine-rich repeat profile. 225 247 IPR001611 GO:0005515
Vivi3g00896 871 Pfam Leucine rich repeat 153 210 IPR001611 GO:0005515
Vivi3g00896 871 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g16250 269 399 - -
Vivi3g00896 871 Gene3D Phosphorylase Kinase; domain 1 471 567 - -
Vivi3g00896 871 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 212 773 - -
Vivi3g00896 871 SMART LRR_typ_2 175 198 IPR003591 -
Vivi3g00896 871 SMART LRR_typ_2 223 246 IPR003591 -
Vivi3g00896 871 SMART LRR_typ_2 294 317 IPR003591 -
Vivi3g00896 871 SMART LRR_typ_2 127 151 IPR003591 -
Vivi3g00896 871 Gene3D Transferase(Phosphotransferase) domain 1 569 797 - -
Vivi3g00896 871 Pfam Leucine Rich Repeat 129 151 IPR001611 GO:0005515
Vivi3g00896 871 Pfam Protein tyrosine and serine/threonine kinase 499 719 IPR001245 GO:0004672|GO:0006468
Vivi3g00896 871 MobiDBLite consensus disorder prediction 846 871 - -
Vivi3g00896 871 MobiDBLite consensus disorder prediction 810 871 - -
Vivi3g00896 871 SUPERFAMILY Protein kinase-like (PK-like) 473 774 IPR011009 -
Vivi3g00896 871 FunFam Predicted protein 463 568 - -
Vivi3g00896 871 Pfam Leucine rich repeat N-terminal domain 34 69 IPR013210 -
Vivi3g00896 871 MobiDBLite consensus disorder prediction 449 469 - -
Vivi3g00896 871 ProSiteProfiles Protein kinase domain profile. 493 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g00896 871 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g16250 33 192 - -
Vivi3g00896 871 Gene3D Ribonuclease Inhibitor 194 383 IPR032675 -
Vivi3g00896 871 SUPERFAMILY L domain-like 90 353 - -
Vivi3g00896 871 MobiDBLite consensus disorder prediction 810 845 - -
Vivi3g00896 871 Gene3D Ribonuclease Inhibitor 33 193 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00896 Vivi-Chr3 14732387 14737913 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g00896 35 666 Miscellaneous Gene Families AT2G16250 54.505 0.0 688
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Vivi3g00896 PK_Tyr_Ser-Thr 4.4e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00896 - - gmx:100805769 1264.6